Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 2.5e-168 595.5 327 100.0
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 3.8e-68 262.7 254 58.3
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 3.2e-67 259.6 242 54.1
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.3e-55 221.1 171 62.6
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 1.8e-54 217.2 180 57.8
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 4.2e-51 206.1 242 48.3
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 3.0e-49 199.9 302 41.4
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 3.0e-49 199.9 246 45.5
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 3.9e-49 199.5 238 47.1
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 8.8e-49 198.4 249 49.0
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 8.8e-49 198.4 249 49.0
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 1.5e-48 197.6 254 44.9
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 1.5e-48 197.6 250 43.6
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.0e-48 197.2 253 45.8
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 2.5e-48 196.8 266 42.9
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 2.5e-48 196.8 243 44.0
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 5.7e-48 195.7 249 48.2
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.3e-47 194.5 237 44.7
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.3e-47 194.5 247 44.9
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.7e-47 194.1 236 47.0
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.7e-47 194.1 256 44.9
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.7e-47 194.1 240 45.4
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 1.7e-47 194.1 248 46.4
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.7e-47 194.1 249 48.6
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 2.2e-47 193.7 262 44.7
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 2.2e-47 193.7 273 43.2
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 2.2e-47 193.7 229 46.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.2e-47 193.7 249 47.8
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 2.8e-47 193.4 237 46.0
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 3.7e-47 193.0 253 45.1
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 6.3e-47 192.2 250 48.4
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 6.3e-47 192.2 179 54.7
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 6.3e-47 192.2 249 44.6
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 6.3e-47 192.2 260 48.5
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 8.2e-47 191.8 182 54.4
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 8.2e-47 191.8 239 46.0
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 8.2e-47 191.8 258 46.5
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 1.1e-46 191.4 252 46.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 1.8e-46 190.7 327 39.1
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.8e-46 190.7 183 54.1
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 1.8e-46 190.7 181 54.7
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 3.1e-46 189.9 181 52.5
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 4.1e-46 189.5 249 45.8
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 4.1e-46 189.5 254 45.3
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 5.3e-46 189.1 236 45.8
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 5.3e-46 189.1 238 45.4
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 5.3e-46 189.1 238 45.4
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 5.3e-46 189.1 235 46.4
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 5.3e-46 189.1 249 43.4
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 5.3e-46 189.1 182 53.3
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 5.3e-46 189.1 253 44.7
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 6.9e-46 188.7 240 47.1
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 9.1e-46 188.3 327 38.5
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 9.1e-46 188.3 327 38.5
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 9.1e-46 188.3 182 52.2
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 9.1e-46 188.3 238 46.2
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 1.2e-45 188.0 257 44.7
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 1.2e-45 188.0 180 54.4
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.2e-45 188.0 210 49.0
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 1.5e-45 187.6 182 52.7
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 2.0e-45 187.2 183 53.6
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 2.0e-45 187.2 183 54.1
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 2.0e-45 187.2 182 53.3
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 3.4e-45 186.4 182 52.2
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 3.4e-45 186.4 256 43.8
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 4.5e-45 186.0 242 43.4
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 4.5e-45 186.0 243 45.7
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 4.5e-45 186.0 253 41.9
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 5.9e-45 185.7 252 42.5
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 5.9e-45 185.7 250 42.4
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 7.7e-45 185.3 183 52.5
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 1.3e-44 184.5 182 52.2
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.3e-44 184.5 249 43.8
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.3e-44 184.5 248 44.0
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 1.3e-44 184.5 239 43.9
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.3e-44 184.5 256 43.8
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 3.8e-44 183.0 182 51.1
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 5.0e-44 182.6 236 44.5
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 6.5e-44 182.2 236 45.3
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 6.5e-44 182.2 182 51.1
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 8.5e-44 181.8 249 43.4
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 2.5e-43 180.3 243 40.7
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 2.5e-43 180.3 226 47.3
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.5e-43 180.3 225 46.2
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 2.5e-43 180.3 241 43.2
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 2.5e-43 180.3 210 47.1
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 2.5e-43 180.3 180 50.6
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 2.5e-43 180.3 308 39.6
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 9.4e-43 178.3 205 46.3
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.6e-42 177.6 273 42.1
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 2.1e-42 177.2 244 40.2
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 3.6e-42 176.4 250 43.6
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 6.1e-42 175.6 272 41.2
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 1.4e-41 174.5 328 37.5
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 1.4e-41 174.5 271 44.3
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 3.9e-41 172.9 210 47.1
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 5.1e-41 172.6 232 45.3
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 8.8e-41 171.8 278 41.0
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.6e-40 170.2 213 49.8
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 5.7e-40 169.1 278 43.9
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 8.2e-39 165.2 248 41.9
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.8e-38 164.1 222 44.1
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.6e-37 160.2 299 38.1
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 7.7e-37 158.7 109 69.7
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 2.2e-36 157.1 109 67.0
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.8e-36 156.4 324 36.1
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 1.9e-35 154.1 158 51.9
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 2.5e-35 153.7 182 45.6
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 2.5e-35 153.7 158 51.9
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 4.2e-35 152.9 197 43.1
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.5e-27 127.9 135 51.9
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 3.1e-22 110.2 114 48.2
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 6.8e-17 92.4 165 32.7
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 8.3e-15 85.5 141 36.2
Pp3c6_29630 Physcomitrium patens HOM05D006540 ORTHO05D008202 7.5e-08 62.4 105 35.2
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 9.8e-08 62.0 44 56.8
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 1.7e-07 61.2 47 57.4


User provided reference genes

Program Settings