Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 5.0e-106 388.7 359 100.0
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 5.8e-38 162.5 144 54.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.3e-37 161.4 173 50.3
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 2.9e-37 160.2 167 50.9
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 6.5e-37 159.1 174 47.1
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 8.4e-37 158.7 167 50.9
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.1e-36 158.3 175 49.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.1e-36 158.3 171 48.0
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.4e-36 157.9 167 51.5
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 2.5e-36 157.1 167 47.9
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 2.5e-36 157.1 167 47.9
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 3.2e-36 156.8 167 50.3
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 5.5e-36 156.0 167 49.7
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 7.1e-36 155.6 173 46.8
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 9.3e-36 155.2 167 50.3
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 9.3e-36 155.2 165 48.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.2e-35 154.8 173 48.0
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.2e-35 154.8 168 49.4
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 1.2e-35 154.8 167 50.3
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.2e-35 154.8 149 52.3
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.2e-35 154.8 167 50.3
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.6e-35 154.5 166 49.4
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.6e-35 154.5 167 48.5
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 1.6e-35 154.5 167 50.3
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 2.1e-35 154.1 167 50.9
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 2.1e-35 154.1 167 50.9
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 2.7e-35 153.7 167 47.9
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 3.5e-35 153.3 167 49.1
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 3.5e-35 153.3 167 49.1
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 3.5e-35 153.3 167 49.7
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.5e-35 153.3 167 49.7
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 4.6e-35 152.9 167 48.5
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 4.6e-35 152.9 166 49.4
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 4.6e-35 152.9 149 51.7
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 4.6e-35 152.9 173 45.1
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 7.9e-35 152.1 167 48.5
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 7.9e-35 152.1 170 47.6
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 7.9e-35 152.1 166 45.8
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 7.9e-35 152.1 175 44.6
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 1.0e-34 151.8 167 47.3
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.0e-34 151.8 167 47.9
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.0e-34 151.8 167 47.9
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.3e-34 151.4 174 46.6
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.3e-34 151.4 167 49.1
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 1.3e-34 151.4 167 47.9
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.3e-34 151.4 167 48.5
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.8e-34 151.0 173 47.4
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.8e-34 151.0 168 47.0
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.8e-34 151.0 167 49.7
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 2.3e-34 150.6 149 51.7
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 3.9e-34 149.8 167 47.3
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 3.9e-34 149.8 167 48.5
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 3.9e-34 149.8 173 46.2
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 5.1e-34 149.4 167 47.3
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.1e-34 149.4 149 52.3
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 5.1e-34 149.4 167 47.9
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 5.1e-34 149.4 168 47.0
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 5.1e-34 149.4 173 47.4
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 6.7e-34 149.1 168 47.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 8.7e-34 148.7 173 46.2
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 8.7e-34 148.7 149 52.3
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 1.1e-33 148.3 167 46.7
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.5e-33 147.9 173 46.2
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.5e-33 147.9 167 44.9
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.5e-33 147.9 154 49.4
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 1.9e-33 147.5 167 47.9
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.9e-33 147.5 173 44.5
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.5e-33 147.1 175 45.7
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 3.3e-33 146.7 167 47.3
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.3e-33 146.7 167 46.1
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 4.3e-33 146.4 146 54.1
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 5.7e-33 146.0 167 47.3
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 5.7e-33 146.0 165 46.7
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 7.4e-33 145.6 151 47.7
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 1.3e-32 144.8 167 44.9
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.3e-32 144.8 167 45.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.3e-32 144.8 167 45.5
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.6e-32 144.4 167 44.9
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.6e-32 144.4 170 45.3
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 1.6e-32 144.4 166 47.6
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 1.6e-32 144.4 152 50.0
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.2e-32 144.1 167 46.7
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 2.2e-32 144.1 167 45.5
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 2.8e-32 143.7 167 44.9
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 4.8e-32 142.9 167 44.9
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 6.3e-32 142.5 167 44.9
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 6.3e-32 142.5 167 44.9
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 6.3e-32 142.5 167 44.9
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 6.3e-32 142.5 164 45.7
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 8.2e-32 142.1 166 45.8
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 8.2e-32 142.1 167 43.7
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.1e-31 141.7 143 50.3
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 1.1e-31 141.7 162 45.7
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.4e-31 141.4 171 46.8
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 3.1e-31 140.2 167 43.7
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 5.3e-31 139.4 150 49.3
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 2.6e-30 137.1 167 44.3
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 9.4e-28 128.6 167 43.1
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 2.2e-24 117.5 188 39.9
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 6.3e-24 115.9 149 47.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 9.1e-23 112.1 145 44.8
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.5e-22 111.3 120 49.2
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 1.7e-21 107.8 168 39.9
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.9e-18 96.7 173 37.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 4.4e-17 93.2 179 34.1
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.9e-12 77.8 102 39.2
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 4.2e-12 76.6 150 30.0
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 9.4e-12 75.5 150 30.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 6.1e-11 72.8 152 32.2
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 8.0e-11 72.4 147 32.0
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 2.3e-10 70.9 125 35.2
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 3.9e-10 70.1 131 34.4
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 5.2e-10 69.7 147 32.0
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 6.7e-10 69.3 165 28.5
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 8.8e-10 68.9 161 28.6
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 1.5e-09 68.2 131 34.4
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 2.0e-09 67.8 127 34.6
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 4.4e-09 66.6 139 31.7
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.7e-09 66.2 168 29.8
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 9.7e-09 65.5 176 29.0
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 9.7e-09 65.5 143 31.5
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 1.3e-08 65.1 126 34.9
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.2e-08 64.3 126 31.7
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 3.7e-08 63.5 144 30.6
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 3.7e-08 63.5 126 31.0
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 4.8e-08 63.2 165 27.9
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 4.8e-08 63.2 150 30.7
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 6.3e-08 62.8 126 32.5
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 6.3e-08 62.8 126 33.3
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 8.2e-08 62.4 131 32.8
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.1e-07 62.0 126 30.2
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.1e-07 62.0 130 33.1
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 1.1e-07 62.0 126 30.2
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 1.8e-07 61.2 126 33.3
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.8e-07 61.2 126 31.0
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 2.4e-07 60.8 149 32.2
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.4e-07 60.8 126 30.2
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 2.4e-07 60.8 126 30.2
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.1e-07 60.5 155 26.5
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.1e-07 60.5 155 26.5
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 4.1e-07 60.1 126 32.5
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 4.1e-07 60.1 144 29.2
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 4.1e-07 60.1 126 31.0
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 5.3e-07 59.7 134 32.1
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 5.3e-07 59.7 126 32.5
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 9.1e-07 58.9 125 31.2
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 9.1e-07 58.9 130 30.0
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 9.1e-07 58.9 145 26.9
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 2.6e-06 57.4 126 32.5
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 2.6e-06 57.4 152 28.9
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 2.6e-06 57.4 165 27.3
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 3.5e-06 57.0 141 29.8
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 5.9e-06 56.2 126 31.7
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 7.7e-06 55.8 127 29.9


User provided reference genes

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