Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.2e-170 600.9 293 100.0
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.1e-78 296.6 291 52.2
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 6.2e-78 295.0 289 51.2
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 2.3e-77 293.1 307 48.2
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 6.8e-77 291.6 295 51.2
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 2.0e-76 290.0 302 49.7
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.6e-76 289.7 309 49.5
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.4e-76 288.9 299 52.2
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 5.8e-76 288.5 312 50.0
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.3e-75 287.3 292 48.6
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.7e-75 287.0 309 48.2
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.2e-75 286.6 299 48.2
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 2.2e-75 286.6 316 48.7
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.2e-75 286.6 292 48.3
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 3.7e-75 285.8 310 48.4
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 4.9e-75 285.4 284 51.8
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 6.4e-75 285.0 295 49.8
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.9e-74 283.5 297 49.5
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 3.2e-74 282.7 309 47.9
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.1e-74 282.3 309 50.5
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 1.2e-73 280.8 309 47.6
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.2e-73 280.8 308 48.4
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 1.6e-73 280.4 309 49.8
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 3.5e-73 279.3 309 47.6
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 3.5e-73 279.3 306 47.7
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 3.5e-73 279.3 310 46.5
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 6.0e-73 278.5 293 49.8
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.8e-73 278.1 287 50.9
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.0e-72 277.7 298 48.7
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.0e-72 277.7 298 49.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.0e-72 277.7 298 50.0
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.0e-72 277.7 261 52.5
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.3e-72 277.3 300 48.7
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.7e-72 276.9 305 47.5
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.7e-72 276.9 304 47.0
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.7e-72 276.9 308 47.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.3e-72 276.6 303 49.5
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 2.3e-72 276.6 309 47.6
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 3.0e-72 276.2 308 47.4
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.9e-72 275.8 305 46.2
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.5e-71 273.9 309 46.6
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 4.3e-71 272.3 306 47.4
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 4.3e-71 272.3 312 46.5
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 7.3e-71 271.6 299 49.2
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 7.3e-71 271.6 259 52.5
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 7.3e-71 271.6 308 46.4
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.2e-70 270.8 307 47.2
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 8.1e-70 268.1 312 46.5
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 8.1e-70 268.1 307 46.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 4.0e-69 265.8 302 46.7
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.0e-69 265.8 304 46.7
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 4.0e-69 265.8 306 45.4
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.2e-68 264.2 309 46.9
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.5e-68 263.8 309 46.6
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.6e-68 263.1 287 49.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.6e-68 263.1 287 49.1
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 5.8e-68 261.9 326 42.6
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 9.9e-68 261.2 316 45.9
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 1.7e-67 260.4 254 51.2
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.9e-67 258.8 297 46.8
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 6.4e-67 258.5 300 47.3
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 8.3e-67 258.1 287 50.2
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 8.3e-67 258.1 322 43.8
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 3.2e-66 256.1 261 51.3
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 4.1e-66 255.8 319 44.2
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 5.4e-66 255.4 366 41.5
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 7.1e-66 255.0 302 46.7
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.0e-64 251.1 267 49.1
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.3e-64 250.0 289 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 5.1e-64 248.8 258 50.8
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 8.6e-64 248.1 310 43.5
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.5e-63 247.3 357 39.8
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.5e-63 246.5 292 44.5
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 3.3e-63 246.1 351 41.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 4.3e-63 245.7 274 47.4
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.4e-61 240.7 276 46.7
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.4e-61 240.7 272 46.0
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.2e-60 237.7 313 43.8
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 3.4e-60 236.1 316 42.7
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 4.4e-60 235.7 303 42.2
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.4e-60 235.7 255 49.8
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 5.8e-60 235.3 358 39.7
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 5.8e-60 235.3 358 39.7
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 9.9e-60 234.6 343 40.8
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.9e-59 233.0 366 38.8
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.2e-58 229.6 279 46.2
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 4.6e-57 225.7 270 44.8
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 4.8e-54 215.7 308 40.3
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 3.1e-53 213.0 281 42.3
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 4.0e-53 212.6 184 54.3
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.3e-53 212.2 188 55.9
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 9.0e-53 211.5 313 41.5
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.4e-52 209.1 314 39.8
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.4e-52 209.1 314 39.8
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 6.4e-51 205.3 309 39.8
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 8.4e-51 204.9 287 42.2
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.4e-50 203.4 223 49.8
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.2e-49 201.1 240 43.3
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.2e-49 201.1 300 40.0
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.5e-47 194.1 294 41.8
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 1.9e-47 193.7 215 47.0
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 5.6e-47 192.2 228 46.9
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.0e-45 184.9 234 44.9
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.0e-44 183.7 229 43.7
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 1.7e-43 180.6 227 43.6
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 2.2e-43 180.3 201 45.8
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 8.4e-43 178.3 260 40.8
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 1.1e-42 177.9 224 44.6
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.0e-40 171.4 238 41.2
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.3e-40 171.0 172 48.3
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.3e-40 170.2 299 38.8
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 3.3e-39 166.4 152 52.6
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.9e-34 150.6 170 46.5
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 7.1e-34 148.7 160 48.8
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.0e-32 144.8 179 45.8
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.0e-32 144.8 113 58.4
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.8e-32 144.1 111 58.6
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 3.2e-26 123.2 154 42.9
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.5e-23 114.4 219 35.2
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 9.0e-21 105.1 78 61.5
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.7e-19 100.9 140 43.6
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.7e-19 100.9 78 59.0
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.4e-18 97.8 101 42.6
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 4.2e-18 96.3 68 60.3
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 3.9e-16 89.7 154 34.4
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.5e-15 87.0 62 61.3
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.1e-10 71.6 85 44.7
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 5.1e-08 62.8 86 44.2
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.7e-06 57.8 44 56.8
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 6.3e-06 55.8 101 33.7


User provided reference genes

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