Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2645.5 1336 100.0
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2254.9 1333 82.8
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2243.0 1334 81.9
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2234.9 1335 82.2
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2234.9 1335 82.2
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2219.5 1333 81.6
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2217.6 1333 81.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2217.2 1333 81.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2216.0 1333 81.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2213.3 1336 81.6
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2209.5 1333 81.2
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2209.1 1336 81.5
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2208.3 1333 81.3
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2207.9 1334 80.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2206.0 1333 81.0
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2205.6 1334 81.0
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2204.5 1334 81.0
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2203.7 1335 80.4
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2200.6 1333 80.9
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2200.2 1333 80.9
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2199.1 1333 81.3
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2198.3 1333 80.7
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2197.9 1333 81.1
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2195.6 1333 81.1
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2195.6 1333 80.5
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2195.2 1332 80.4
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2195.2 1333 80.7
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2194.9 1333 80.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2194.9 1333 80.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2194.9 1334 80.7
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2193.7 1333 80.8
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2193.7 1334 80.6
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2193.3 1333 80.8
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2193.3 1333 80.6
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2193.3 1332 80.5
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2192.5 1344 79.9
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2192.2 1332 80.9
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2191.4 1333 80.6
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2191.0 1334 80.7
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2191.0 1333 80.8
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2190.6 1333 80.4
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2190.2 1333 80.6
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2189.8 1334 80.6
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2189.1 1333 80.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2189.1 1333 79.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2189.1 1334 80.3
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2188.7 1331 80.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2187.5 1332 81.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2187.1 1333 80.5
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2187.1 1333 80.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2186.8 1333 80.3
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2186.8 1333 80.3
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2185.2 1333 80.2
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2184.8 1333 80.3
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2184.5 1333 79.7
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2183.7 1333 80.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2182.1 1333 79.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2181.8 1332 80.6
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2180.6 1333 80.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2180.6 1333 80.1
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2180.2 1333 80.0
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2180.2 1333 80.0
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2179.8 1332 80.6
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2179.8 1333 79.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2179.4 1335 80.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2179.4 1348 79.7
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1334 80.6
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2177.5 1333 80.5
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2176.7 1333 79.7
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2176.7 1332 79.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2174.8 1332 79.9
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2174.8 1332 79.7
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2174.8 1333 80.1
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2174.8 1333 80.1
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1332 79.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1336 80.4
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2171.7 1333 79.7
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2171.0 1332 79.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2171.0 1332 79.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2171.0 1348 79.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2170.6 1332 79.6
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2170.6 1332 79.6
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2169.0 1333 79.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2168.7 1332 79.6
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2168.3 1333 80.2
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2168.3 1333 79.8
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2167.1 1332 79.5
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2166.7 1360 78.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2166.3 1396 77.0
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2165.6 1332 79.4
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2164.0 1336 79.4
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2163.7 1334 79.4
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2162.1 1334 79.4
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2161.7 1352 78.9
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2161.0 1332 79.5
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2157.9 1333 79.7
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2153.3 1334 78.9
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2142.5 1333 79.4
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2129.0 1333 78.6
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2122.8 1334 78.7
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2119.0 1332 79.1
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2097.4 1333 77.2
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2037.7 1333 76.4
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2030.0 1358 75.1
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 1975.7 1208 80.4
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1966.4 1212 80.0
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 1957.2 1210 79.2
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 1943.3 1296 75.2
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1928.7 1333 71.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1875.1 1338 69.5
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1766.5 1332 69.1
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1714.1 1071 78.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1697.2 1059 78.6
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1679.1 1353 66.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1546.6 915 82.1
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1541.9 914 82.5
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1489.2 896 81.8
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1359.0 810 81.6
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1349.3 810 80.9
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1076.2 692 78.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.1e-291 1007.3 677 73.3
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 3.6e-274 949.1 572 79.9
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 6.1e-274 948.3 671 71.1
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.2e-272 944.1 1200 45.3
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 7.8e-229 798.5 589 68.9
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.6e-189 666.4 420 78.6
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.9e-187 661.0 420 78.3
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 4.3e-187 659.8 399 78.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 2.0e-184 651.0 420 76.9
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.2e-183 647.5 418 75.6
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 4.5e-176 623.2 1431 31.9
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.3e-162 578.6 1481 30.4
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.6e-112 410.6 1279 27.8
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 4.0e-84 317.8 174 88.5
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 9.4e-57 226.9 122 86.9
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 4.7e-56 224.6 148 71.6
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.6e-40 172.9 107 80.4
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.8e-28 132.9 139 48.2
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.4e-28 132.5 91 75.8
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.4e-28 132.5 177 43.5
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 1.6e-27 129.8 99 67.7
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 3.0e-18 99.0 60 81.7


User provided reference genes

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