Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0104 Selaginella moellendorffii HOM05D004751 ORTHO05D005819 0.0e+00 2624.0 1341 100.0
Pp3c9_3860 Physcomitrium patens HOM05D004751 ORTHO05D005819 0.0e+00 1241.9 1796 44.4
Pp3c15_10000 Physcomitrium patens HOM05D004751 ORTHO05D005819 0.0e+00 1241.1 1800 44.1
Mapoly0002s0158 Marchantia polymorpha HOM05D004751 ORTHO05D005819 0.0e+00 1180.2 1638 44.6
GSVIVG01015287001 Vitis vinifera HOM05D004751 ORTHO05D005819 0.0e+00 1177.5 1438 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4976 Anthoceros agrestis HOM05D004751 ORTHO05D005819 0.0e+00 1176.4 1866 42.7
TAR626G1784 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1174.1 1587 45.6
TAR639G0003 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1172.9 1587 45.6
Hma1.2p1_0012F.1_g007400 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 0.0e+00 1167.5 1533 46.5
AUR62010880 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1165.2 1582 45.6
MBI15_g07764_MAGBIO Magnolia biondii HOM05D004751 ORTHO05D005819 0.0e+00 1162.1 1583 46.4
Gohir.A05G026300 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 1158.7 1570 45.2
RcHm_v2.0_Chr1g0331571 Rosa chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1158.7 1575 45.7
Haze_25834 Corylus avellana HOM05D004751 ORTHO05D005819 0.0e+00 1156.7 1576 45.5
Gohir.D05G027800 Gossypium hirsutum HOM05D004751 ORTHO05D005819 0.0e+00 1155.6 1571 45.3
Aqoxy7G03607 Aquilegia oxysepala HOM05D004751 ORTHO05D005819 0.0e+00 1154.4 1584 45.1
CSS0000434 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 1154.4 1564 44.9
CSS0026223 Camellia sinensis var. sinensis HOM05D004751 ORTHO05D005819 0.0e+00 1154.4 1564 44.9
PSO210G2464 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 1153.7 1569 46.1
Dinv42256 Davidia involucrata HOM05D004751 ORTHO05D005819 0.0e+00 1153.3 1573 45.7
Gorai.009G028000 Gossypium raimondii HOM05D004751 ORTHO05D005819 0.0e+00 1152.5 1571 45.1
EL10Ac8g18369 Beta vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 1151.3 1585 44.7
QL02p040907 Quercus lobata HOM05D004751 ORTHO05D005819 0.0e+00 1151.3 1569 45.6
Thecc.09G099100 Theobroma cacao HOM05D004751 ORTHO05D005819 0.0e+00 1151.3 1583 44.9
MD02G1262100 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 1149.4 1565 45.6
Actinidia17515 Actinidia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1148.7 1573 45.6
PSO210G3406 Papaver somniferum HOM05D004751 ORTHO05D005819 0.0e+00 1148.7 1571 46.1
Duzib150G1241 Durio zibethinus HOM05D004751 ORTHO05D005819 0.0e+00 1147.5 1576 45.4
HanXRQChr03g0061061 Helianthus annuus HOM05D004751 ORTHO05D005819 0.0e+00 1145.2 1474 47.7
FAN06G4551 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 1144.8 1573 45.0
FvH4_7g05110 Fragaria vesca HOM05D004751 ORTHO05D005819 0.0e+00 1144.4 1571 45.1
Manes.16G108000 Manihot esculenta HOM05D004751 ORTHO05D005819 0.0e+00 1144.4 1573 45.6
TAR383G0360 Trochodendron aralioides HOM05D004751 ORTHO05D005819 0.0e+00 1144.4 1588 45.0
Atru.chr7.1477 Acer truncatum HOM05D004751 ORTHO05D005819 0.0e+00 1142.5 1578 45.3
Prupe.2G065200 Prunus persica HOM05D004751 ORTHO05D005819 0.0e+00 1142.1 1546 46.1
Migut.K00548 Erythranthe guttata HOM05D004751 ORTHO05D005819 0.0e+00 1141.7 1572 45.4
SGA_v2.0_scaffold19G08722 Striga asiatica HOM05D004751 ORTHO05D005819 0.0e+00 1140.6 1569 45.4
PGR102G2506 Punica granatum HOM05D004751 ORTHO05D005819 0.0e+00 1139.0 1517 46.5
Sopen04g006260 Solanum pennellii HOM05D004751 ORTHO05D005819 0.0e+00 1138.6 1573 44.9
PGSC0003DMG400023589 Solanum tuberosum HOM05D004751 ORTHO05D005819 0.0e+00 1137.5 1573 44.9
MD07G1058300 Malus domestica HOM05D004751 ORTHO05D005819 0.0e+00 1135.9 1580 45.2
FAN01G0060 Fragaria x ananassa HOM05D004751 ORTHO05D005819 0.0e+00 1135.2 1570 45.0
Cc06_g10590 Coffea canephora HOM05D004751 ORTHO05D005819 0.0e+00 1134.8 1578 45.5
SalBow1G2004 Salvia bowleyana HOM05D004751 ORTHO05D005819 0.0e+00 1134.8 1588 44.4
THA.LOC104814595 Tarenaya hassleriana HOM05D004751 ORTHO05D005819 0.0e+00 1133.2 1561 46.1
CANSAT56G3494 Cannabis sativa HOM05D004751 ORTHO05D005819 0.0e+00 1132.5 1577 44.9
CAN.G787.12 Capsicum annuum HOM05D004751 ORTHO05D005819 0.0e+00 1131.3 1574 44.7
Lsat_1_v5_gn_7_39580 Lactuca sativa HOM05D004751 ORTHO05D005819 0.0e+00 1130.9 1515 46.2
Sp7g27250 Schrenkiella parvula HOM05D004751 ORTHO05D005819 0.0e+00 1130.9 1524 45.5
A01p08650 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1130.2 1511 46.0
BraA01t00815Z Brassica rapa HOM05D004751 ORTHO05D005819 0.0e+00 1129.8 1511 46.0
MSTRG.26388 Avicennia marina HOM05D004751 ORTHO05D005819 0.0e+00 1127.5 1572 44.9
Oeu021455.1 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1127.5 1411 47.8
BolC1t00970H Brassica oleracea HOM05D004751 ORTHO05D005819 0.0e+00 1126.7 1521 45.9
Thhalv10024212m.g Eutrema salsugineum HOM05D004751 ORTHO05D005819 0.0e+00 1126.3 1530 45.4
C01p10120 Brassica napus HOM05D004751 ORTHO05D005819 0.0e+00 1125.9 1521 45.8
vmacro10847 Vaccinium macrocarpon HOM05D004751 ORTHO05D005819 0.0e+00 1125.9 1577 44.6
Aa31LG2G21070 Aethionema arabicum HOM05D004751 ORTHO05D005819 0.0e+00 1125.5 1565 45.0
AL7G23020 Arabidopsis lyrata HOM05D004751 ORTHO05D005819 0.0e+00 1125.5 1535 45.5
DCAR_028653 Daucus carota HOM05D004751 ORTHO05D005819 0.0e+00 1125.5 1572 45.3
AT4G29380 Arabidopsis thaliana HOM05D004751 ORTHO05D005819 0.0e+00 1123.6 1532 45.7
Potri.006G153100 Populus trichocarpa HOM05D004751 ORTHO05D005819 0.0e+00 1122.8 1568 45.5
Sed0000923 Sechium edule HOM05D004751 ORTHO05D005819 0.0e+00 1121.3 1571 44.6
Ciclev10007242m.g Citrus clementina HOM05D004751 ORTHO05D005819 0.0e+00 1119.0 1576 44.8
Medtr6g088835 Medicago truncatula HOM05D004751 ORTHO05D005819 0.0e+00 1116.7 1557 44.9
TPR.G31000 Trifolium pratense HOM05D004751 ORTHO05D005819 0.0e+00 1116.3 1562 44.8
TWI34G0109 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 1115.5 1565 45.2
Peaxi162Scf01157g00011 Petunia axillaris HOM05D004751 ORTHO05D005819 0.0e+00 1113.6 1587 44.9
Hund26286 Selenicereus undatus HOM05D004751 ORTHO05D005819 0.0e+00 1113.6 1498 45.5
Lj2g0020264 Lotus japonicus HOM05D004751 ORTHO05D005819 0.0e+00 1111.7 1562 45.3
Carub.0007s1117 Capsella rubella HOM05D004751 ORTHO05D005819 0.0e+00 1108.6 1530 45.7
Lj7C667T4 Lonicera japonica HOM05D004751 ORTHO05D005819 0.0e+00 1107.8 1538 45.8
CsaV3_1G039890 Cucumis sativus L. HOM05D004751 ORTHO05D005819 0.0e+00 1107.0 1560 44.6
Glyma.07G125200 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 1107.0 1555 44.6
Sabra06G0121300 Salix brachista HOM05D004751 ORTHO05D005819 0.0e+00 1107.0 1568 44.3
ClCG03G016070 Citrullus lanatus HOM05D004751 ORTHO05D005819 0.0e+00 1104.4 1584 44.1
Sc08g0008060 Simmondsia chinensis HOM05D004751 ORTHO05D005819 0.0e+00 1104.0 1434 47.0
arahy.Tifrunner.gnm1.ann1.11NKIJ Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1102.8 1552 45.0
VMungo0464G0426 Vigna mungo HOM05D004751 ORTHO05D005819 0.0e+00 1102.8 1555 44.9
Psat1g048040 Pisum sativum HOM05D004751 ORTHO05D005819 0.0e+00 1102.4 1560 44.8
Lalb_Chr14g0371941 Lupinus albus HOM05D004751 ORTHO05D005819 0.0e+00 1102.0 1559 44.5
Glyma.01G006600 Glycine max HOM05D004751 ORTHO05D005819 0.0e+00 1099.3 1558 44.2
MELO3C015420.2 Cucumis melo HOM05D004751 ORTHO05D005819 0.0e+00 1099.0 1562 44.1
unitig_8.g4485 Utricularia gibba HOM05D004751 ORTHO05D005819 0.0e+00 1099.0 1543 44.7
Phvul.004G175100 Phaseolus vulgaris HOM05D004751 ORTHO05D005819 0.0e+00 1094.3 1541 44.6
TWI32G0016 Tripterygium wilfordii HOM05D004751 ORTHO05D005819 0.0e+00 1092.4 1564 44.7
arahy.Tifrunner.gnm1.ann1.YRLX64 Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1091.6 1521 43.2
Ca_25582_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 0.0e+00 1088.6 1560 44.0
AUR62021393 Chenopodium quinoa HOM05D004751 ORTHO05D005819 0.0e+00 1087.4 1581 44.0
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 0.0e+00 1087.0 1437 46.7
arahy.Tifrunner.gnm1.ann1.9BR2YY Arachis hypogaea HOM05D004751 ORTHO05D005819 0.0e+00 1086.6 1513 43.3
Oeu018580.2 Olea europaea HOM05D004751 ORTHO05D005819 0.0e+00 1085.9 1476 46.8
Solyc04g012170.4 Solanum lycopersicum HOM05D004751 ORTHO05D005819 0.0e+00 1083.2 1573 44.1
Zm00001eb257890 Zea mays HOM05D004751 ORTHO05D005819 1.1e-310 1070.5 1513 44.5
Rhsim05G0038900 Rhododendron simsii HOM05D004751 ORTHO05D005819 6.1e-306 1054.7 1573 43.1
Cfa003165 Carpinus fangiana HOM05D004751 ORTHO05D005819 2.6e-304 1049.3 1574 42.9
ATR0730G043 Amborella trichopoda HOM05D004751 ORTHO05D005819 1.3e-303 1047.0 1519 45.8
BcaC09g51723 Brassica carinata HOM05D004751 ORTHO05D005819 8.5e-292 1007.7 1510 43.6
Ah.09g230480 Amaranthus hybridus HOM05D004751 ORTHO05D005819 5.7e-288 995.0 1485 42.8
Zm00001eb192340 Zea mays HOM05D004751 ORTHO05D005819 7.7e-277 958.0 1317 45.6
Eucgr.C03719 Eucalyptus grandis HOM05D004751 ORTHO05D005819 6.1e-274 948.3 1431 42.8
COL.COLO4_34728 Corchorus olitorius HOM05D004751 ORTHO05D005819 6.8e-241 838.6 1431 40.5
Hund09091 Selenicereus undatus HOM05D004751 ORTHO05D005819 1.6e-234 817.4 1355 41.3
Nitab4.5_0004673g0040 Nicotiana tabacum HOM05D004751 ORTHO05D005819 1.8e-233 813.9 885 52.9
CARHR237190 Cardamine hirsuta HOM05D004751 ORTHO05D005819 2.7e-229 800.0 1202 43.3
Cpa.g.sc78.25 Carica papaya HOM05D004751 ORTHO05D005819 6.9e-225 785.4 1532 36.7
SEGI_30648 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 2.5e-214 750.4 1338 39.9
arahy.Tifrunner.gnm1.ann1.U02M06 Arachis hypogaea HOM05D004751 ORTHO05D005819 2.0e-208 730.7 1268 40.3
Nitab4.5_0001242g0100 Nicotiana tabacum HOM05D004751 ORTHO05D005819 9.4e-190 668.7 1361 35.4
CBR_g47981 Chara braunii HOM05D004751 ORTHO05D005819 6.3e-186 656.0 2553 26.9
Ca_25584_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 4.0e-164 583.6 720 46.9
CDE04G0916 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 3.5e-160 570.5 566 55.1
SHI02649 Sapria himalayana HOM05D004751 ORTHO05D005819 5.2e-156 556.6 830 43.4
CDE04G1922 Ceratophyllum demersum HOM05D004751 ORTHO05D005819 1.9e-134 485.0 793 40.1
PRCOL_00004168 Prasinoderma coloniale HOM05D004751 ORTHO05D005819 4.7e-133 480.3 1726 26.9
Dinv36675 Davidia involucrata HOM05D004751 ORTHO05D005819 2.9e-114 417.9 363 59.5
FAN03G2869 Fragaria x ananassa HOM05D004751 ORTHO05D005819 4.9e-114 417.2 373 58.4
Cre06.g290500 Chlamydomonas reinhardtii HOM05D004751 ORTHO05D005819 1.4e-105 389.0 2151 22.9
Os02g0796700 Oryza sativa ssp. japonica HOM05D004751 ORTHO05D005819 3.2e-97 361.3 445 42.9
Dinv36676 Davidia involucrata HOM05D004751 ORTHO05D005819 1.7e-90 339.0 339 60.2
Dinv36677 Davidia involucrata HOM05D004751 ORTHO05D005819 6.1e-88 330.5 439 43.7
CiPaw.03G223200 Carya illinoinensis HOM05D004751 ORTHO05D005819 3.3e-86 324.7 202 75.2
SEGI_14388 Sequoiadendron giganteum HOM05D004751 ORTHO05D005819 1.8e-84 318.9 203 72.9
SHI02646 Sapria himalayana HOM05D004751 ORTHO05D005819 2.4e-76 292.0 215 64.7
BcaB08g34921 Brassica carinata HOM05D004751 ORTHO05D005819 2.6e-67 261.9 188 66.0
MCO11G423 Micromonas commoda HOM05D004751 ORTHO05D005819 1.9e-65 255.8 364 41.8
Ca_25581_v3 Cicer arietinum L. HOM05D004751 ORTHO05D005819 6.1e-64 250.8 430 37.4
Nitab4.5_0015727g0010 Nicotiana tabacum HOM05D004751 ORTHO05D005819 6.1e-64 250.8 299 47.2
RcHm_v2.0_Chr1g0332501 Rosa chinensis HOM05D004751 ORTHO05D005819 2.5e-57 228.8 567 32.6
Hma1.2p1_0386F.1_g141720 Hydrangea macrophylla HOM05D004751 ORTHO05D005819 5.4e-52 211.1 215 53.5
A01p08660 Brassica napus HOM05D004751 ORTHO05D000206 7.2e-49 200.7 307 40.4
Lsat_1_v5_gn_0_39700 Lactuca sativa HOM05D004751 ORTHO05D005819 1.7e-45 189.5 275 41.1
RcHm_v2.0_Chr1g0332481 Rosa chinensis HOM05D004751 ORTHO05D005819 1.1e-44 186.8 200 47.5
CiPaw.03G223300 Carya illinoinensis HOM05D004751 ORTHO05D005819 8.6e-34 150.6 204 42.2
A06p04880 Brassica napus HOM05D004751 ORTHO05D005819 5.6e-33 147.9 88 77.3
BraA06t23692Z Brassica rapa HOM05D004751 ORTHO05D005819 5.6e-33 147.9 88 77.3
Ah.09g230490 Amaranthus hybridus HOM05D004751 ORTHO05D005819 1.0e-31 143.7 92 72.8
COL.COLO4_34727 Corchorus olitorius HOM05D004751 ORTHO05D005819 1.5e-30 139.8 92 70.7
C07p57020 Brassica napus HOM05D004751 ORTHO05D005819 1.3e-29 136.7 204 41.7
CDE06G0341 Ceratophyllum demersum HOM05D004751 ORTHO05D008828 8.1e-24 117.5 65 81.5
A09p40550 Brassica napus HOM05D004751 ORTHO05D005819 3.1e-23 115.5 97 58.8
BraA09t39552Z Brassica rapa HOM05D004751 ORTHO05D005819 3.1e-23 115.5 97 58.8
CDE12G0100 Ceratophyllum demersum HOM05D000087 ORTHO05D016004 8.1e-16 90.9 121 43.8
C09p03160 Brassica napus HOM05D004751 ORTHO05D005819 1.4e-15 90.1 88 55.7
ATR0661G544 Amborella trichopoda HOM05D004751 ORTHO05D005819 2.3e-10 72.8 60 51.7
SHI02652 Sapria himalayana HOM05D004751 ORTHO05D005819 2.5e-09 69.3 107 31.8
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 6.9e-07 61.2 243 25.5
SHI02648 Sapria himalayana HOM05D004751 ORTHO05D005819 9.9e-06 57.4 43 58.1


User provided reference genes

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