Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 5.7e-71 270.8 135 100.0
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 6.6e-27 124.4 129 45.7
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 6.0e-20 101.3 94 48.9
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 7.9e-20 100.9 94 48.9
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 1.0e-19 100.5 96 49.0
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 1.3e-19 100.1 105 43.8
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 2.3e-19 99.4 97 44.3
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 3.9e-19 98.6 93 49.5
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 6.7e-19 97.8 122 36.9
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 6.7e-19 97.8 112 42.0
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 8.7e-19 97.4 97 48.5
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 8.7e-19 97.4 93 49.5
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 8.7e-19 97.4 112 41.1
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 2.5e-18 95.9 123 41.5
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 4.3e-18 95.1 96 46.9
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 1.3e-17 93.6 115 39.1
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 1.3e-17 93.6 113 39.8
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 1.3e-17 93.6 93 47.3
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 2.1e-17 92.8 94 42.6
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 2.1e-17 92.8 112 39.3
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 4.8e-17 91.7 94 41.5
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 4.8e-17 91.7 125 37.6
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 4.8e-17 91.7 96 44.8
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 4.8e-17 91.7 94 44.7
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 6.2e-17 91.3 116 40.5
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 8.1e-17 90.9 97 42.3
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.1e-16 90.5 109 38.5
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.4e-16 90.1 109 38.5
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 1.8e-16 89.7 109 38.5
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 2.4e-16 89.4 116 39.7
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 3.1e-16 89.0 116 37.9
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 3.1e-16 89.0 96 41.7
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 3.1e-16 89.0 93 41.9
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 4.0e-16 88.6 93 41.9
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 4.0e-16 88.6 94 42.6
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 5.3e-16 88.2 119 37.8
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 9.0e-16 87.4 94 44.7
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 9.0e-16 87.4 93 45.2
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 1.2e-15 87.0 119 37.8
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 1.2e-15 87.0 119 37.8
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 1.2e-15 87.0 98 43.9
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 1.5e-15 86.7 116 37.9
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 1.5e-15 86.7 94 43.6
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 2.0e-15 86.3 110 37.3
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 2.0e-15 86.3 93 41.9
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 2.6e-15 85.9 96 41.7
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 3.4e-15 85.5 91 46.2
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 3.4e-15 85.5 91 44.0
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 3.4e-15 85.5 93 40.9
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 4.5e-15 85.1 122 34.4
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 4.5e-15 85.1 80 46.2
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 7.6e-15 84.3 122 35.2
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 9.9e-15 84.0 123 38.2
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 9.9e-15 84.0 91 44.0
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 9.9e-15 84.0 91 44.0
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 9.9e-15 84.0 91 44.0
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 1.3e-14 83.6 94 42.6
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 1.7e-14 83.2 91 40.7
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 1.7e-14 83.2 120 35.8
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 2.9e-14 82.4 98 40.8
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 2.9e-14 82.4 93 43.0
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 3.8e-14 82.0 91 42.9
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 4.9e-14 81.6 93 41.9
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 6.4e-14 81.3 91 42.9
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 8.4e-14 80.9 91 42.9
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 1.1e-13 80.5 93 39.8
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 2.4e-13 79.3 91 41.8
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 2.4e-13 79.3 82 42.7
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 2.4e-13 79.3 90 42.2
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 7.1e-13 77.8 77 46.8
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 3.5e-12 75.5 88 39.8
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 7.9e-12 74.3 108 33.3
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 1.8e-11 73.2 119 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1645 Anthoceros agrestis HOM05D002174 ORTHO05D005941 3.9e-11 72.0 86 40.7
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 8.7e-11 70.9 81 42.0
SEGI_11453 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 1.1e-10 70.5 121 33.9
AL4G23430 Arabidopsis lyrata HOM05D002174 ORTHO05D005941 1.5e-10 70.1 97 40.2
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 1.5e-10 70.1 94 39.4
AT2G28900 Arabidopsis thaliana HOM05D002174 ORTHO05D005941 1.9e-10 69.7 97 40.2
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 2.5e-10 69.3 100 40.0
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 4.3e-10 68.6 76 43.4
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.3e-09 67.0 113 34.5
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 1.6e-09 66.6 84 38.1
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 1.6e-09 66.6 111 30.6
CARHR122070 Cardamine hirsuta HOM05D002174 ORTHO05D005941 2.1e-09 66.2 93 38.7
Cfa011503 Carpinus fangiana HOM05D002174 ORTHO05D005941 2.1e-09 66.2 120 30.0
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis HOM05D002174 ORTHO05D005941 2.8e-09 65.9 121 30.6
vmacro14518 Vaccinium macrocarpon HOM05D002174 ORTHO05D005941 3.7e-09 65.5 119 32.8
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 6.2e-09 64.7 101 36.6
BcaB02g10211 Brassica carinata HOM05D002174 ORTHO05D005941 8.2e-09 64.3 93 36.6
BcaC02g11023 Brassica carinata HOM05D002174 ORTHO05D005941 8.2e-09 64.3 93 36.6
C04p22080 Brassica napus HOM05D002174 ORTHO05D005941 8.2e-09 64.3 93 36.6
BolC4t23731H Brassica oleracea HOM05D002174 ORTHO05D005941 8.2e-09 64.3 93 36.6
Thhalv10017379m.g Eutrema salsugineum HOM05D002174 ORTHO05D005941 8.2e-09 64.3 93 36.6
Carub.0004s0989 Capsella rubella HOM05D002174 ORTHO05D005941 1.8e-08 63.2 93 36.6
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 1.8e-08 63.2 67 41.8
THA.LOC104800661 Tarenaya hassleriana HOM05D002174 ORTHO05D005941 1.8e-08 63.2 91 36.3
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 2.4e-08 62.8 56 51.8
Cfa009013 Carpinus fangiana HOM05D002174 ORTHO05D005941 2.4e-08 62.8 119 30.3
A07p19380 Brassica napus HOM05D002174 ORTHO05D005941 3.1e-08 62.4 93 35.5
BraA07t29643Z Brassica rapa HOM05D002174 ORTHO05D005941 3.1e-08 62.4 93 35.5
CANSAT54G0240 Cannabis sativa HOM05D002174 ORTHO05D005941 9.0e-08 60.8 119 30.3
MD11G1108300 Malus domestica HOM05D002174 ORTHO05D005941 9.0e-08 60.8 118 29.7
Os05g0111200 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005941 9.0e-08 60.8 119 30.3
FAN16G0236 Fragaria x ananassa HOM05D002174 ORTHO05D005941 1.2e-07 60.5 119 31.9
CSS0007494 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 2.6e-07 59.3 117 31.6
Hma1.2p1_0418F.1_g149160 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 2.6e-07 59.3 119 30.3
Lj3g0015229 Lotus japonicus HOM05D002174 ORTHO05D005941 2.6e-07 59.3 119 31.9
SMO358G0166 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 2.6e-07 59.3 121 28.9
ATR0559G109 Amborella trichopoda HOM05D002174 ORTHO05D005941 3.4e-07 58.9 93 33.3
CDE04G1891 Ceratophyllum demersum HOM05D002174 ORTHO05D005941 4.5e-07 58.5 122 31.1
FvH4_3g36080 Fragaria vesca HOM05D002174 ORTHO05D005941 4.5e-07 58.5 119 30.3
RcHm_v2.0_Chr5g0064511 Rosa chinensis HOM05D002174 ORTHO05D005941 4.5e-07 58.5 119 30.3
Sabra16G0144700 Salix brachista HOM05D002174 ORTHO05D005941 4.5e-07 58.5 114 33.3
DCAR_005338 Daucus carota HOM05D002174 ORTHO05D005941 5.8e-07 58.2 116 29.3
Sp4g11710 Schrenkiella parvula HOM05D002174 ORTHO05D005941 5.8e-07 58.2 93 34.4
CiPaw.13G094300 Carya illinoinensis HOM05D002174 ORTHO05D005941 7.6e-07 57.8 119 28.6
ECA236G0657 Erigeron canadensis HOM05D002174 ORTHO05D005941 7.6e-07 57.8 120 30.0
FAN25G1103 Fragaria x ananassa HOM05D002174 ORTHO05D005941 7.6e-07 57.8 119 29.4
FAN21G2955 Fragaria x ananassa HOM05D002174 ORTHO05D005941 1.3e-06 57.0 119 28.6
Atru.chr3.3905 Acer truncatum HOM05D002174 ORTHO05D005941 1.7e-06 56.6 119 27.7
CSS0035653 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 1.7e-06 56.6 117 31.6
Ciclev10029517m.g Citrus clementina HOM05D002174 ORTHO05D005941 1.7e-06 56.6 116 29.3
Cc01_g12870 Coffea canephora HOM05D002174 ORTHO05D005941 1.7e-06 56.6 119 31.1
GSVIVG01024962001 Vitis vinifera HOM05D002174 ORTHO05D005941 1.7e-06 56.6 119 29.4
Actinidia23940 Actinidia chinensis HOM05D002174 ORTHO05D005941 2.2e-06 56.2 119 29.4
CDE09G0525 Ceratophyllum demersum HOM05D002174 ORTHO05D005941 2.2e-06 56.2 119 29.4
Dinv42951 Davidia involucrata HOM05D002174 ORTHO05D005941 2.2e-06 56.2 93 33.3
Dinv43149 Davidia involucrata HOM05D002174 ORTHO05D005941 2.2e-06 56.2 93 33.3
Glyma.15G038200 Glycine max HOM05D002174 ORTHO05D005941 2.2e-06 56.2 119 30.3
Lalb_Chr14g0375101 Lupinus albus HOM05D002174 ORTHO05D005941 2.2e-06 56.2 119 30.3
Manes.01G174000 Manihot esculenta HOM05D002174 ORTHO05D005941 2.2e-06 56.2 109 33.0
Manes.07G090900 Manihot esculenta HOM05D002174 ORTHO05D005941 2.2e-06 56.2 88 34.1
Glyma.13G336100 Glycine max HOM05D002174 ORTHO05D005941 2.9e-06 55.8 119 30.3
Manes.07G091400 Manihot esculenta HOM05D002174 ORTHO05D005941 3.8e-06 55.5 109 32.1
PSO339G1022 Papaver somniferum HOM05D002174 ORTHO05D005941 3.8e-06 55.5 119 31.1
Ca_01326_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005941 4.9e-06 55.1 119 28.6
Pp3c3_28050 Physcomitrium patens HOM05D002174 ORTHO05D005941 4.9e-06 55.1 124 29.0
QL01p032005 Quercus lobata HOM05D002174 ORTHO05D005941 4.9e-06 55.1 119 29.4
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 4.9e-06 55.1 61 47.5
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 4.9e-06 55.1 128 28.9
TPR.G34319 Trifolium pratense HOM05D002174 ORTHO05D005941 4.9e-06 55.1 124 28.2
Cpa.g.sc81.151 Carica papaya HOM05D002174 ORTHO05D005941 6.5e-06 54.7 93 32.3
Potri.001G239900 Populus trichocarpa HOM05D002174 ORTHO05D005941 6.5e-06 54.7 114 29.8
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 6.5e-06 54.7 52 48.1
ECA246G2588 Erigeron canadensis HOM05D002174 ORTHO05D005447 8.4e-06 54.3 92 32.6
Hma1.2p1_0035F.1_g022420 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 8.4e-06 54.3 119 28.6


User provided reference genes

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