Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 8.3e-244 846.7 443 100.0
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 7.2e-163 577.8 422 70.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.8e-161 573.2 423 71.6
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 6.7e-161 571.2 423 70.7
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 4.4e-160 568.5 423 71.2
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 7.4e-160 567.8 424 69.6
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.8e-158 563.1 423 69.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.8e-158 563.1 445 68.3
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 3.1e-158 562.4 423 70.0
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 3.1e-158 562.4 423 70.0
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.1e-158 562.4 423 69.7
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 4.1e-158 562.0 423 69.0
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 4.1e-158 562.0 449 67.5
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 5.3e-158 561.6 423 69.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.0e-157 559.7 423 69.5
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.0e-157 559.7 423 69.5
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.0e-157 559.7 423 69.7
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.6e-157 559.3 423 69.5
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 4.5e-157 558.5 423 68.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.7e-156 556.6 438 66.7
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.7e-156 556.6 423 69.0
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 2.2e-156 556.2 441 66.0
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 2.2e-156 556.2 423 68.6
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.9e-156 555.8 423 68.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.8e-156 555.4 423 67.4
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 3.8e-156 555.4 423 69.5
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 5.0e-156 555.1 423 69.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 6.5e-156 554.7 423 68.1
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 6.5e-156 554.7 432 67.6
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 8.5e-156 554.3 423 68.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 8.5e-156 554.3 423 69.3
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 4.2e-155 552.0 438 67.1
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 5.5e-155 551.6 423 68.6
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 5.5e-155 551.6 423 68.8
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 5.5e-155 551.6 423 68.8
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 7.2e-155 551.2 423 68.6
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 7.2e-155 551.2 423 67.8
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.2e-154 550.4 423 68.8
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 2.7e-154 549.3 423 69.3
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.4e-153 547.0 423 68.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.8e-153 546.6 425 67.5
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.3e-153 546.2 426 66.2
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.3e-153 546.2 423 67.8
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.3e-153 546.2 423 68.1
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 3.0e-153 545.8 423 67.8
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 5.2e-153 545.0 445 65.4
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 6.8e-153 544.7 423 67.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 8.8e-153 544.3 423 68.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.5e-152 543.5 434 66.4
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.5e-152 543.5 423 67.1
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.0e-152 543.1 423 67.1
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.0e-152 543.1 423 67.6
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.4e-152 542.3 423 66.9
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 3.4e-152 542.3 423 67.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 3.4e-152 542.3 423 66.9
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.4e-152 542.3 423 67.4
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 3.4e-152 542.3 423 68.8
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 4.4e-152 542.0 423 66.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 4.4e-152 542.0 425 67.8
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.4e-152 542.0 424 67.9
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 4.4e-152 542.0 422 67.3
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.4e-152 542.0 439 65.6
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.5e-152 541.2 423 67.8
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 7.5e-152 541.2 425 68.0
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.3e-151 540.4 423 67.1
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-151 540.0 423 66.9
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.7e-151 540.0 422 67.1
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 2.2e-151 539.7 423 66.7
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 2.2e-151 539.7 423 66.9
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 3.7e-151 538.9 423 66.9
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 3.7e-151 538.9 434 66.1
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.1e-150 537.3 425 66.6
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.1e-150 537.3 423 66.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.8e-150 536.6 423 67.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.8e-150 536.6 422 66.4
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.1e-150 535.8 425 67.1
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 4.1e-150 535.4 434 65.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 4.1e-150 535.4 434 65.4
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.1e-150 535.4 409 68.9
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 5.3e-150 535.0 434 66.1
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 7.0e-150 534.6 410 69.0
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.0e-149 533.1 404 69.3
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.0e-148 530.8 432 66.0
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.2e-148 529.6 423 66.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 6.5e-148 528.1 423 65.0
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 6.5e-148 528.1 423 65.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.5e-147 526.9 434 65.0
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.9e-147 526.6 423 66.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 9.4e-147 524.2 435 64.1
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.7e-146 522.7 450 64.4
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 6.1e-146 521.5 449 62.8
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.0e-145 520.8 399 68.7
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.0e-145 518.8 406 67.0
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 4.0e-145 518.8 450 62.2
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.4e-144 515.4 423 65.7
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 7.7e-141 504.6 449 62.8
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 2.3e-140 503.1 436 62.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 6.6e-140 501.5 372 71.5
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 6.3e-135 485.0 423 61.2
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 2.4e-134 483.0 391 66.8
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.6e-133 480.3 409 64.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.0e-133 479.9 385 64.7
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.9e-133 478.4 400 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.1e-131 474.2 360 68.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 5.6e-131 471.9 372 68.0
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 8.0e-130 468.0 438 57.3
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.3e-127 460.7 391 64.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.1e-117 426.8 430 56.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 3.9e-116 422.5 438 55.0
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 4.4e-112 409.1 329 63.5
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.4e-105 387.5 298 68.8
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.9e-103 379.8 424 54.7
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 9.3e-102 374.8 387 56.8
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 3.2e-94 349.7 277 67.9
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 4.6e-85 319.3 388 50.3
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.0e-84 316.6 236 71.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 7.4e-67 258.8 217 61.8
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 5.0e-63 246.1 183 70.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.5e-62 243.8 193 66.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.6e-61 240.0 195 64.1
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.8e-60 237.7 202 61.9
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.5e-55 219.2 440 37.5
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.5e-55 219.2 204 57.8
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.7e-51 206.1 182 64.8
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.0e-48 197.6 147 68.0
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.0e-41 172.6 122 68.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.1e-37 159.5 138 62.3
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.0e-37 159.1 136 63.2
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.7e-29 133.3 123 62.6
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 4.5e-24 116.7 102 60.8
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 8.6e-23 112.5 260 33.1
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 8.0e-21 105.9 156 42.9
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.2e-20 103.2 260 31.2
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.4e-19 100.5 79 67.1
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 5.4e-17 93.2 101 50.5
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.5e-14 84.3 114 44.7
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 8.0e-13 79.3 57 66.7
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.8e-12 78.2 87 48.3
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 9.8e-11 72.4 72 56.9
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.7e-10 70.5 80 52.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 4.9e-10 70.1 49 65.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 4.9e-10 70.1 49 65.3
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 8.3e-10 69.3 62 59.7
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-09 68.9 74 54.1
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 5.4e-09 66.6 60 51.7
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 5.4e-09 66.6 80 51.2
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-08 65.5 61 59.0
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.0e-08 64.7 61 57.4
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 4.6e-08 63.5 70 54.3
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 4.6e-08 63.5 80 50.0
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.3e-07 61.2 90 44.4
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 6.6e-07 59.7 42 64.3
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 6.6e-07 59.7 42 64.3
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 8.6e-07 59.3 166 29.5
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.3e-06 57.0 63 55.6
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 7.3e-06 56.2 47 59.6
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 7.3e-06 56.2 160 28.1


User provided reference genes

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