Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO343G0148 Selaginella moellendorffii HOM05D016136 ORTHO05D021322 0.0e+00 2877.0 1458 100.0
AagrBONN_evm.TU.Sc2ySwM_117.813 Anthoceros agrestis HOM05D016136 ORTHO05D021322 4.7e-296 1021.9 1443 40.1
Mapoly0097s0025 Marchantia polymorpha HOM05D016136 ORTHO05D021322 5.2e-234 815.8 1283 37.9
CBR_g8818 Chara braunii HOM05D016136 ORTHO05D021322 1.3e-189 668.3 983 36.6
Pp3c9_24640 Physcomitrium patens HOM05D016136 ORTHO05D021322 2.7e-174 617.5 1286 32.7
Pp3c15_23600 Physcomitrium patens HOM05D016136 ORTHO05D021322 1.6e-110 405.6 900 31.1
PGR044G0565 Punica granatum HOM05D000730 ORTHO05D000578 1.2e-12 80.5 463 22.2
CSS0025631 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 1.7e-11 76.6 431 22.3
Manes.04G156900 Manihot esculenta HOM05D000730 ORTHO05D000578 6.5e-11 74.7 431 21.3
HanXRQChr04g0119551 Helianthus annuus HOM05D000730 ORTHO05D000578 8.5e-11 74.3 446 22.2
MELO3C011140.2 Cucumis melo HOM05D000730 ORTHO05D000578 3.2e-10 72.4 424 21.0
Sc10g0004540 Simmondsia chinensis HOM05D000730 ORTHO05D000578 3.2e-10 72.4 457 22.3
ClCG08G012220 Citrullus lanatus HOM05D000730 ORTHO05D000578 1.6e-09 70.1 526 20.9
Gohir.D05G284200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 2.7e-09 69.3 439 21.6
Gorai.009G298800 Gossypium raimondii HOM05D000730 ORTHO05D000578 2.7e-09 69.3 439 21.6
arahy.Tifrunner.gnm1.ann1.H567TY Arachis hypogaea HOM05D000730 ORTHO05D000578 3.6e-09 68.9 614 20.4
Ciclev10007340m.g Citrus clementina HOM05D000730 ORTHO05D000578 6.1e-09 68.2 391 20.5
Gohir.A08G249900 Gossypium hirsutum HOM05D000730 ORTHO05D000578 6.1e-09 68.2 381 21.5
Gohir.D08G270700 Gossypium hirsutum HOM05D000730 ORTHO05D000578 6.1e-09 68.2 380 20.8
arahy.Tifrunner.gnm1.ann1.8I68MQ Arachis hypogaea HOM05D000730 ORTHO05D000578 8.0e-09 67.8 451 21.1
CsaV3_2G030850 Cucumis sativus L. HOM05D000730 ORTHO05D000578 1.0e-08 67.4 413 20.1
MD07G1046600 Malus domestica HOM05D000730 ORTHO05D000578 1.0e-08 67.4 516 21.5
Gorai.004G288600 Gossypium raimondii HOM05D000730 ORTHO05D000578 1.4e-08 67.0 380 20.8
Phvul.011G201400 Phaseolus vulgaris HOM05D000730 ORTHO05D000578 1.8e-08 66.6 451 21.3
Sed0004211 Sechium edule HOM05D000730 ORTHO05D000578 1.8e-08 66.6 416 20.2
Thecc.09G045400 Theobroma cacao HOM05D000730 ORTHO05D000578 1.8e-08 66.6 415 21.0
Eucgr.J00067 Eucalyptus grandis HOM05D000730 ORTHO05D000578 2.3e-08 66.2 422 21.8
TPR.G15110 Trifolium pratense HOM05D000730 ORTHO05D000578 4.0e-08 65.5 375 20.3
SMO116G0331 Selaginella moellendorffii HOM05D000730 ORTHO05D000578 5.2e-08 65.1 537 20.7
Atru.chr12.1287 Acer truncatum HOM05D000730 ORTHO05D000578 6.7e-08 64.7 403 20.3
Thecc.10G145500 Theobroma cacao HOM05D000730 ORTHO05D000578 8.8e-08 64.3 436 20.9
TPR.G8523 Trifolium pratense HOM05D000730 ORTHO05D000578 8.8e-08 64.3 461 21.9
TAR383G0283 Trochodendron aralioides HOM05D000730 ORTHO05D000578 8.8e-08 64.3 415 21.0
Gohir.A05G283200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 2.0e-07 63.2 439 21.9
VMungo1127G0979 Vigna mungo HOM05D000730 ORTHO05D000578 2.0e-07 63.2 451 20.8
Duzib150G0630 Durio zibethinus HOM05D000730 ORTHO05D000578 2.6e-07 62.8 422 19.9
Glyma.15G230600 Glycine max HOM05D000730 ORTHO05D000578 2.6e-07 62.8 451 21.1
COL.COLO4_20721 Corchorus olitorius HOM05D000730 ORTHO05D000578 4.4e-07 62.0 613 19.9
ECA248G1154 Erigeron canadensis HOM05D000730 ORTHO05D000578 4.4e-07 62.0 411 20.9
Sed0013589 Sechium edule HOM05D000730 ORTHO05D000578 4.4e-07 62.0 440 20.2
GSVIVG01035623001 Vitis vinifera HOM05D000730 ORTHO05D000578 4.4e-07 62.0 357 21.6
Aa31sc24G200 Aethionema arabicum HOM05D000730 ORTHO05D000578 5.7e-07 61.6 426 22.1
Gohir.D07G008333 Gossypium hirsutum HOM05D000730 ORTHO05D000578 5.7e-07 61.6 392 21.7
Gorai.001G008200 Gossypium raimondii HOM05D000730 ORTHO05D000578 5.7e-07 61.6 392 21.7
Mapoly0001s0069 Marchantia polymorpha HOM05D016136 ORTHO05D252384 7.5e-07 61.2 75 45.3
Duzib168G2244 Durio zibethinus HOM05D000730 ORTHO05D000578 9.7e-07 60.8 381 20.2
Gohir.A05G046600 Gossypium hirsutum HOM05D000730 ORTHO05D000578 9.7e-07 60.8 382 20.2
QL12p041333 Quercus lobata HOM05D000730 ORTHO05D000578 1.3e-06 60.5 419 20.0
Actinidia06224 Actinidia chinensis HOM05D000730 ORTHO05D000578 1.7e-06 60.1 507 20.1
Glyma.04G084300 Glycine max HOM05D000730 ORTHO05D000578 2.2e-06 59.7 381 21.0
Glyma.06G086000 Glycine max HOM05D000730 ORTHO05D000578 3.7e-06 58.9 381 21.0
Medtr8g040190 Medicago truncatula HOM05D000730 ORTHO05D000578 8.2e-06 57.8 512 20.5


User provided reference genes

Program Settings