Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO341G0023 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 9.1e-38 159.8 86 100.0
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 1.4e-09 66.2 86 43.0
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 1.8e-09 65.9 83 43.4
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 2.3e-09 65.5 86 40.7
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 2.3e-09 65.5 86 40.7
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 2.3e-09 65.5 86 40.7
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 2.3e-09 65.5 86 40.7
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 5.2e-09 64.3 86 39.5
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 5.2e-09 64.3 86 38.4
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 5.2e-09 64.3 86 40.7
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 5.2e-09 64.3 86 40.7
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 6.8e-09 63.9 86 39.5
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 6.8e-09 63.9 86 39.5
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 6.8e-09 63.9 86 40.7
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 8.9e-09 63.5 86 40.7
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 2.6e-08 62.0 86 37.2
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.6e-08 62.0 86 37.2
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.6e-08 62.0 86 37.2
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 2.6e-08 62.0 86 37.2
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 2.6e-08 62.0 86 39.5
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 3.4e-08 61.6 86 37.2
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 3.4e-08 61.6 86 40.7
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.4e-08 61.6 86 37.2
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 4.4e-08 61.2 84 41.7
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 4.4e-08 61.2 86 39.5
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 4.4e-08 61.2 86 37.2
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 4.4e-08 61.2 86 37.2
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 4.4e-08 61.2 85 38.8
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 4.4e-08 61.2 86 37.2
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 4.4e-08 61.2 86 37.2
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 5.7e-08 60.8 86 38.4
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 5.7e-08 60.8 86 39.5
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 5.7e-08 60.8 86 38.4
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 7.5e-08 60.5 86 39.5
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 7.5e-08 60.5 86 38.4
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 7.5e-08 60.5 84 40.5
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 7.5e-08 60.5 86 36.0
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 7.5e-08 60.5 86 38.4
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 7.5e-08 60.5 86 37.2
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 7.5e-08 60.5 86 37.2
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 37.2
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 37.2
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 38.4
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 38.4
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 38.4
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 38.4
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 37.2
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 36.0
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 37.2
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 37.2
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 39.5
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 9.8e-08 60.1 86 39.5
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 1.3e-07 59.7 84 39.3
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 1.3e-07 59.7 86 38.4
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 1.3e-07 59.7 86 36.0
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 1.3e-07 59.7 86 38.4
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 1.7e-07 59.3 86 38.4
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 1.7e-07 59.3 86 38.4
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 2.2e-07 58.9 84 40.5
CARHR186300 Cardamine hirsuta HOM05D004009 ORTHO05D004617 2.2e-07 58.9 86 39.5
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 2.2e-07 58.9 86 34.9
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 2.2e-07 58.9 83 37.3
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 2.2e-07 58.9 86 36.0
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 2.2e-07 58.9 86 38.4
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 2.8e-07 58.5 84 40.5
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 2.8e-07 58.5 84 39.3
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 2.8e-07 58.5 86 37.2
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 2.8e-07 58.5 86 38.4
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 2.8e-07 58.5 86 36.0
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 3.7e-07 58.2 86 36.0
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.7e-07 58.2 86 37.2
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.7e-07 58.2 86 37.2
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 3.7e-07 58.2 86 37.2
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.7e-07 58.2 86 37.2
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 4.9e-07 57.8 86 36.0
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 4.9e-07 57.8 86 38.4
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 6.3e-07 57.4 77 39.0
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 6.3e-07 57.4 86 33.7
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 6.3e-07 57.4 86 34.9
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 6.3e-07 57.4 86 37.2
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 8.3e-07 57.0 86 36.0
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 1.1e-06 56.6 86 36.0
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.8e-06 55.8 86 34.9
EL10Ac5g12451 Beta vulgaris HOM05D004009 ORTHO05D004617 1.8e-06 55.8 85 36.5
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 1.8e-06 55.8 74 41.9
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 1.8e-06 55.8 86 34.9
PGR119G0770 Punica granatum HOM05D004009 ORTHO05D004617 4.1e-06 54.7 86 36.0
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 5.4e-06 54.3 76 38.2
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 5.4e-06 54.3 86 32.6
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 7.0e-06 53.9 86 33.7
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 7.0e-06 53.9 83 37.3
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 7.0e-06 53.9 86 33.7
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 7.0e-06 53.9 85 35.3
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 9.2e-06 53.5 85 36.5
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 9.2e-06 53.5 85 36.5
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 9.2e-06 53.5 86 34.9


User provided reference genes

Program Settings