Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.0e-168 596.7 301 100.0
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.2e-90 335.9 299 58.9
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 6.7e-88 328.2 325 56.0
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.6e-87 326.2 305 59.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.1e-81 305.1 301 54.8
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 8.0e-81 304.7 304 54.6
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.0e-80 304.3 305 55.4
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 2.3e-80 303.1 305 53.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.0e-80 302.4 302 54.3
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 4.0e-80 302.4 308 54.5
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 5.2e-80 302.0 301 55.1
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 5.2e-80 302.0 305 54.8
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 6.8e-80 301.6 307 54.4
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.6e-79 299.7 302 55.3
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.4e-79 299.3 301 53.2
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.4e-79 298.9 302 54.6
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.7e-79 298.5 301 54.5
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 7.5e-79 298.1 301 54.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 7.5e-79 298.1 281 58.0
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 9.8e-79 297.7 301 53.8
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.3e-78 297.4 316 52.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.3e-78 297.4 297 53.2
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-78 297.4 302 54.3
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-78 297.4 301 53.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.7e-78 297.0 297 56.2
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.7e-78 297.0 308 53.6
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-78 297.0 308 53.6
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.8e-78 296.2 305 53.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.8e-78 296.2 301 53.5
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 3.7e-78 295.8 305 53.4
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.7e-78 295.8 308 53.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.7e-78 295.8 292 55.1
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 3.7e-78 295.8 301 53.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 3.7e-78 295.8 302 53.6
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.7e-78 295.8 306 53.6
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.7e-78 295.8 305 53.8
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.8e-78 295.4 292 54.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 6.3e-78 295.0 305 53.4
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 6.3e-78 295.0 305 53.4
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.3e-78 295.0 292 54.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 8.3e-78 294.7 304 53.6
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 8.3e-78 294.7 308 54.2
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.8e-77 293.5 302 53.0
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.8e-77 293.5 322 51.6
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.8e-77 293.5 304 53.3
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.1e-77 292.7 303 53.5
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 3.1e-77 292.7 305 53.1
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 5.4e-77 292.0 305 52.1
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 7.0e-77 291.6 301 53.2
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 9.1e-77 291.2 303 53.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 9.1e-77 291.2 305 52.8
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 9.1e-77 291.2 296 54.1
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 9.1e-77 291.2 296 53.4
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.2e-76 290.8 296 53.7
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.6e-76 290.4 304 53.9
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.6e-76 290.4 296 53.4
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.0e-76 290.0 303 52.8
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.7e-76 289.7 304 53.0
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.7e-76 289.7 290 54.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 3.5e-76 289.3 295 52.5
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 4.5e-76 288.9 296 52.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 4.5e-76 288.9 300 52.3
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.9e-76 288.5 305 52.1
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.3e-75 287.3 298 54.0
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.7e-75 287.0 317 52.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.7e-75 287.0 300 52.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.3e-75 286.6 298 51.3
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.9e-75 286.2 323 49.8
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.9e-75 286.2 302 51.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.9e-75 286.2 307 52.4
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 3.8e-75 285.8 305 53.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 5.0e-75 285.4 297 53.2
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.6e-75 285.0 306 49.7
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 6.6e-75 285.0 302 50.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.6e-75 284.6 302 50.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 8.6e-75 284.6 298 51.3
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.6e-75 284.6 313 51.8
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-74 284.3 302 51.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.9e-74 283.5 313 51.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.5e-74 283.1 308 51.3
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.3e-74 282.7 296 52.4
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.5e-74 282.0 298 51.7
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 7.2e-74 281.6 290 52.8
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 9.5e-74 281.2 303 49.8
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 9.5e-74 281.2 262 55.3
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.5e-74 281.2 311 50.5
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.2e-73 280.8 323 49.2
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-73 280.8 268 55.2
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 2.1e-73 280.0 313 50.5
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.6e-73 279.3 268 54.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 3.6e-73 279.3 286 53.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.7e-73 278.9 239 58.6
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.7e-73 278.9 282 55.7
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 4.7e-73 278.9 262 56.5
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-72 277.7 304 49.0
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-72 277.7 242 57.9
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.4e-72 277.3 315 50.5
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.8e-72 276.9 230 60.4
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.8e-72 276.9 302 49.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.3e-72 276.6 226 60.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 3.0e-72 276.2 226 60.2
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 5.2e-72 275.4 314 50.3
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 5.2e-72 275.4 236 58.9
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.8e-72 275.0 236 58.5
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 8.9e-72 274.6 355 46.2
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-71 274.2 239 58.2
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-71 274.2 233 59.2
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.2e-71 274.2 223 60.5
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.2e-71 274.2 266 55.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 5.7e-71 271.9 297 53.2
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.8e-71 271.2 289 49.1
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.7e-70 270.4 207 63.8
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.7e-70 269.2 242 57.4
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 8.3e-70 268.1 303 50.2
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 8.3e-70 268.1 218 62.8
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-69 267.7 292 49.0
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 4.1e-69 265.8 252 54.4
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.2e-68 264.2 228 57.5
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.7e-67 260.4 237 54.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.5e-66 256.5 316 47.8
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 5.6e-66 255.4 182 72.0
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 2.8e-65 253.1 203 61.6
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.5e-63 247.3 253 53.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 4.4e-63 245.7 255 53.7
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.9e-61 240.4 239 52.3
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.2e-61 239.6 177 65.5
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 7.8e-60 235.0 237 51.9
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.0e-59 232.3 301 45.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.1e-58 231.1 242 51.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.5e-58 229.9 207 55.1
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 5.6e-58 228.8 231 52.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.6e-57 227.3 214 57.9
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-57 226.9 178 64.0
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.0e-57 224.9 173 63.0
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-56 224.2 302 43.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-56 224.2 302 43.4
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 8.9e-56 221.5 213 54.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.9e-54 216.5 223 53.4
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.1e-48 198.0 249 43.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.2e-45 186.4 251 44.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-43 180.6 160 60.0
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.6e-43 178.7 172 54.1
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.9e-39 164.9 136 64.0
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 3.6e-33 146.4 250 39.6
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-32 144.8 159 50.3
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 5.3e-32 142.5 181 47.5
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.0e-24 116.3 108 56.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.3e-24 115.9 82 67.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 5.3e-24 115.9 157 42.0
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.0e-23 114.0 61 80.3
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.6e-23 113.6 88 59.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 5.1e-19 99.4 80 56.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 9.0e-08 62.0 89 37.1


User provided reference genes

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