Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0258 Selaginella moellendorffii HOM05D000361 ORTHO05D036593 1.2e-46 189.5 95 100.0
MBI11_g23193_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D007482 2.5e-20 102.1 93 55.9
EL10Ac8g19503 Beta vulgaris HOM05D000361 ORTHO05D007482 3.2e-20 101.7 94 55.3
Pp3c1_34820 Physcomitrium patens HOM05D000361 ORTHO05D007482 4.2e-20 101.3 91 56.0
Nn4g22072 Nelumbo nucifera HOM05D000361 ORTHO05D007482 1.2e-19 99.8 94 55.3
Os11g0484300 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D007482 2.3e-18 95.5 94 51.1
Hund06727 Selenicereus undatus HOM05D000361 ORTHO05D007482 2.3e-18 95.5 94 53.2
Oeu010265.1 Olea europaea HOM05D000361 ORTHO05D007482 3.0e-18 95.1 94 51.1
CBR_g30228 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-18 94.7 91 51.6
HPP92_023046 Vanilla planifolia HOM05D000361 ORTHO05D007482 4.0e-18 94.7 93 52.7
Sc10g0009070 Simmondsia chinensis HOM05D000361 ORTHO05D007482 5.2e-18 94.4 94 51.1
GSVIVG01001119001 Vitis vinifera HOM05D000361 ORTHO05D007482 8.8e-18 93.6 94 51.1
Aqoxy5G02979 Aquilegia oxysepala HOM05D000361 ORTHO05D007482 1.2e-17 93.2 94 50.0
CSS0019126 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007482 1.5e-17 92.8 91 51.6
CSS0044557 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007482 1.5e-17 92.8 91 51.6
AUR62034021 Chenopodium quinoa HOM05D000361 ORTHO05D007482 1.5e-17 92.8 94 48.9
TAR629G3206 Trochodendron aralioides HOM05D000361 ORTHO05D007482 1.5e-17 92.8 94 50.0
AUR62042521 Chenopodium quinoa HOM05D000361 ORTHO05D007482 2.6e-17 92.0 94 48.9
CiPaw.06G111400 Carya illinoinensis HOM05D000361 ORTHO05D007482 5.7e-17 90.9 94 50.0
Actinidia30574 Actinidia chinensis HOM05D000361 ORTHO05D007482 7.5e-17 90.5 91 50.5
MSTRG.8063 Avicennia marina HOM05D000361 ORTHO05D007482 7.5e-17 90.5 91 47.3
MD16G1144700 Malus domestica HOM05D000361 ORTHO05D007482 7.5e-17 90.5 93 48.4
PGR102G2757 Punica granatum HOM05D000361 ORTHO05D007482 9.8e-17 90.1 91 50.5
vmacro15518 Vaccinium macrocarpon HOM05D000361 ORTHO05D007482 9.8e-17 90.1 91 51.6
CDE05G0767 Ceratophyllum demersum HOM05D000361 ORTHO05D007482 1.7e-16 89.4 93 50.5
Peaxi162Scf01167g00115 Petunia axillaris HOM05D000361 ORTHO05D007482 1.7e-16 89.4 91 48.4
Rhsim13G0167000 Rhododendron simsii HOM05D000361 ORTHO05D007482 1.7e-16 89.4 91 50.5
Zm00001eb169610 Zea mays HOM05D000361 ORTHO05D007482 1.7e-16 89.4 94 50.0
Haze_12528 Corylus avellana HOM05D000361 ORTHO05D007482 2.2e-16 89.0 94 50.0
PSO017G0122 Papaver somniferum HOM05D000361 ORTHO05D007482 2.2e-16 89.0 94 51.1
PSO478G1108 Papaver somniferum HOM05D000361 ORTHO05D007482 2.2e-16 89.0 94 51.1
MD08G1097800 Malus domestica HOM05D000361 ORTHO05D036593 2.8e-16 88.6 93 47.3
MD13G1134100 Malus domestica HOM05D000361 ORTHO05D007482 2.8e-16 88.6 93 47.3
arahy.Tifrunner.gnm1.ann1.D87PD7 Arachis hypogaea HOM05D000361 ORTHO05D007482 3.7e-16 88.2 94 48.9
arahy.Tifrunner.gnm1.ann1.WNQC8Q Arachis hypogaea HOM05D000361 ORTHO05D007482 3.7e-16 88.2 94 48.9
Dinv06935 Davidia involucrata HOM05D000361 ORTHO05D007482 3.7e-16 88.2 94 50.0
Hma1.2p1_0738F.1_g210950 Hydrangea macrophylla HOM05D000361 ORTHO05D007482 3.7e-16 88.2 94 48.9
Ah.14g085960 Amaranthus hybridus HOM05D000361 ORTHO05D007482 8.3e-16 87.0 94 50.0
MELO3C026749.2 Cucumis melo HOM05D000361 ORTHO05D007482 1.1e-15 86.7 94 46.8
Nitab4.5_0005286g0020 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.4e-15 86.3 91 47.3
CsaV3_3G032880 Cucumis sativus L. HOM05D000361 ORTHO05D007482 1.8e-15 85.9 94 45.7
Glyma.17G035000 Glycine max HOM05D000361 ORTHO05D007482 1.8e-15 85.9 91 47.3
Solyc11g040120.3 Solanum lycopersicum HOM05D000361 ORTHO05D007482 1.8e-15 85.9 91 47.3
Sopen11g017320 Solanum pennellii HOM05D000361 ORTHO05D007482 1.8e-15 85.9 91 47.3
PGSC0003DMG400002190 Solanum tuberosum HOM05D000361 ORTHO05D007482 1.8e-15 85.9 91 47.3
BcaC07g37281 Brassica carinata HOM05D000361 ORTHO05D007482 2.4e-15 85.5 92 46.7
C08p07110 Brassica napus HOM05D000361 ORTHO05D007482 2.4e-15 85.5 92 46.7
BolC8t47556H Brassica oleracea HOM05D000361 ORTHO05D007482 2.4e-15 85.5 92 46.7
Eucgr.B03569 Eucalyptus grandis HOM05D000361 ORTHO05D007482 2.4e-15 85.5 91 48.4
BcaB07g33912 Brassica carinata HOM05D000361 ORTHO05D007482 3.1e-15 85.1 92 46.7
Medtr4g122270 Medicago truncatula HOM05D000361 ORTHO05D007482 3.1e-15 85.1 91 46.2
Rhsim08G0136200 Rhododendron simsii HOM05D000361 ORTHO05D036593 3.1e-15 85.1 83 53.0
Lalb_Chr17g0344991 Lupinus albus HOM05D000361 ORTHO05D007482 4.1e-15 84.7 91 46.2
Phvul.003G116100 Phaseolus vulgaris HOM05D000361 ORTHO05D007482 4.1e-15 84.7 91 48.4
VMungo1215G2015 Vigna mungo HOM05D000361 ORTHO05D007482 4.1e-15 84.7 91 47.3
Carub.0001s3540 Capsella rubella HOM05D000361 ORTHO05D007482 5.4e-15 84.3 92 46.7
SalBow2G1437 Salvia bowleyana HOM05D000361 ORTHO05D007482 5.4e-15 84.3 94 44.7
ClCG10G013030 Citrullus lanatus HOM05D000361 ORTHO05D007482 7.0e-15 84.0 94 46.8
Glyma.07G238400 Glycine max HOM05D000361 ORTHO05D007482 7.0e-15 84.0 91 48.4
QL03p048338 Quercus lobata HOM05D000361 ORTHO05D007482 7.0e-15 84.0 94 45.7
CAN.G624.12 Capsicum annuum HOM05D000361 ORTHO05D007482 9.1e-15 83.6 94 45.7
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 9.1e-15 83.6 93 45.2
DCAR_026439 Daucus carota HOM05D000361 ORTHO05D007482 1.2e-14 83.2 94 45.7
AT1G44900 Arabidopsis thaliana HOM05D000361 ORTHO05D007482 1.6e-14 82.8 92 45.7
Ciclev10027769m.g Citrus clementina HOM05D000361 ORTHO05D007482 1.6e-14 82.8 94 44.7
Migut.K01134 Erythranthe guttata HOM05D000361 ORTHO05D007482 1.6e-14 82.8 94 41.5
BcaB04g17580 Brassica carinata HOM05D000361 ORTHO05D007482 2.0e-14 82.4 92 46.7
A08p06290 Brassica napus HOM05D000361 ORTHO05D007482 2.0e-14 82.4 92 46.7
TPR.G25402 Trifolium pratense HOM05D000361 ORTHO05D007482 2.0e-14 82.4 94 44.7
HPP92_023097 Vanilla planifolia HOM05D000361 ORTHO05D007482 2.0e-14 82.4 82 52.4
Prupe.1G211500 Prunus persica HOM05D000361 ORTHO05D007482 2.7e-14 82.0 91 45.1
CANSAT21G0886 Cannabis sativa HOM05D000361 ORTHO05D007482 3.5e-14 81.6 91 47.3
Cc11_g14860 Coffea canephora HOM05D000361 ORTHO05D007482 3.5e-14 81.6 94 48.9
BraA08t32632Z Brassica rapa HOM05D000361 ORTHO05D007482 4.5e-14 81.3 92 46.7
Mapoly0007s0014 Marchantia polymorpha HOM05D000361 ORTHO05D007482 4.5e-14 81.3 84 56.0
A10p07200 Brassica napus HOM05D000361 ORTHO05D007482 7.7e-14 80.5 92 44.6
BraSC36t46098Z Brassica rapa HOM05D000361 ORTHO05D007482 1.0e-13 80.1 92 44.6
BcaC08g42885 Brassica carinata HOM05D000361 ORTHO05D007482 1.3e-13 79.7 92 46.7
C06p01030 Brassica napus HOM05D000361 ORTHO05D007482 1.3e-13 79.7 92 46.7
BolC6t35239H Brassica oleracea HOM05D000361 ORTHO05D007482 1.3e-13 79.7 92 46.7
Psat0s4013g0080 Pisum sativum HOM05D000361 ORTHO05D007482 1.3e-13 79.7 91 41.8
CARHR036120 Cardamine hirsuta HOM05D000361 ORTHO05D007482 1.7e-13 79.3 92 44.6
AL1G52570 Arabidopsis lyrata HOM05D000361 ORTHO05D007482 3.8e-13 78.2 92 43.5
Ca_21434_v3 Cicer arietinum L. HOM05D000361 ORTHO05D007482 3.8e-13 78.2 94 43.6
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 3.8e-13 78.2 87 47.1
Aa31LG3G14210 Aethionema arabicum HOM05D000361 ORTHO05D007482 5.0e-13 77.8 92 45.7
HanXRQChr06g0175361 Helianthus annuus HOM05D000361 ORTHO05D007482 5.0e-13 77.8 91 45.1
Thhalv10011214m.g Eutrema salsugineum HOM05D000361 ORTHO05D007482 6.5e-13 77.4 92 45.7
SGA_v2.0_scaffold258G45751 Striga asiatica HOM05D000361 ORTHO05D007482 8.6e-13 77.0 91 41.8
Cpa.g.sc1761.2 Carica papaya HOM05D000361 ORTHO05D007482 1.1e-12 76.6 92 41.3
Lj3A1078T19 Lonicera japonica HOM05D000361 ORTHO05D007482 1.5e-12 76.3 94 44.7
TWI18G1079 Tripterygium wilfordii HOM05D000361 ORTHO05D007482 1.5e-12 76.3 91 44.0
Lj4g0014568 Lotus japonicus HOM05D000361 ORTHO05D007482 1.9e-12 75.9 90 45.6
Cfa009472 Carpinus fangiana HOM05D002839 ORTHO05D007482 2.5e-12 75.5 80 51.2
Manes.08G099300 Manihot esculenta HOM05D000361 ORTHO05D007482 2.5e-12 75.5 91 47.3
RcHm_v2.0_Chr4g0428411 Rosa chinensis HOM05D000361 ORTHO05D007482 2.5e-12 75.5 91 45.1
THA.LOC104801409 Tarenaya hassleriana HOM05D000361 ORTHO05D007482 2.5e-12 75.5 92 42.4
FAN17G1841 Fragaria x ananassa HOM05D000361 ORTHO05D007482 9.5e-12 73.6 91 42.9
Lsat_1_v5_gn_3_33321 Lactuca sativa HOM05D000361 ORTHO05D007482 1.6e-11 72.8 91 42.9
FvH4_4g22180 Fragaria vesca HOM05D000361 ORTHO05D007482 2.8e-11 72.0 91 41.8
FAN12G2733 Fragaria x ananassa HOM05D000361 ORTHO05D007482 2.8e-11 72.0 91 41.8
ECA246G5349 Erigeron canadensis HOM05D000361 ORTHO05D007482 1.0e-10 70.1 94 37.2
Potri.001G070500 Populus trichocarpa HOM05D000361 ORTHO05D007482 1.0e-10 70.1 91 41.8
Sabra01G0049500 Salix brachista HOM05D000361 ORTHO05D007482 1.4e-10 69.7 91 41.8
SGA_v2.0_scaffold258G45762 Striga asiatica HOM05D000361 ORTHO05D007482 1.2e-09 66.6 83 42.2
Atru.chr12.1475 Acer truncatum HOM05D000361 ORTHO05D007482 5.7e-09 64.3 72 47.2
Thecc.01G239700 Theobroma cacao HOM05D000361 ORTHO05D007482 5.7e-09 64.3 94 38.3
Gohir.A09G002700 Gossypium hirsutum HOM05D000361 ORTHO05D007482 7.5e-09 63.9 91 39.6
Gohir.D09G002500 Gossypium hirsutum HOM05D000361 ORTHO05D007482 7.5e-09 63.9 91 39.6
Gorai.006G003100 Gossypium raimondii HOM05D000361 ORTHO05D007482 7.5e-09 63.9 91 39.6
Gohir.A03G086700 Gossypium hirsutum HOM05D000361 ORTHO05D007482 3.7e-08 61.6 94 37.2
Gohir.D02G106100 Gossypium hirsutum HOM05D000361 ORTHO05D007482 8.3e-08 60.5 94 36.2
Gorai.005G120400 Gossypium raimondii HOM05D000361 ORTHO05D007482 8.3e-08 60.5 94 36.2
SHI04104 Sapria himalayana HOM05D000361 ORTHO05D007482 4.1e-07 58.2 93 35.5
Duzib160G0854 Durio zibethinus HOM05D000361 ORTHO05D007482 5.9e-06 54.3 123 29.3


User provided reference genes

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