Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0215 Selaginella moellendorffii HOM05D002035 ORTHO05D002032 2.4e-140 502.3 282 100.0
SMO356G0001 Selaginella moellendorffii HOM05D002035 ORTHO05D002032 8.4e-24 115.2 164 42.1
Mapoly0004s0132 Marchantia polymorpha HOM05D002035 ORTHO05D002032 7.9e-22 108.6 150 38.0
Zm00001eb200520 Zea mays HOM05D002035 ORTHO05D002032 2.4e-18 97.1 186 34.9
Ca_12159_v3 Cicer arietinum L. HOM05D002035 ORTHO05D002032 4.0e-18 96.3 180 34.4
MD16G1198500 Malus domestica HOM05D002035 ORTHO05D002032 6.9e-18 95.5 178 34.3
HanXRQChr09g0260681 Helianthus annuus HOM05D002035 ORTHO05D002032 9.0e-18 95.1 151 36.4
Prupe.1G020200 Prunus persica HOM05D002035 ORTHO05D002032 9.0e-18 95.1 182 33.0
SalBow2G1507 Salvia bowleyana HOM05D002035 ORTHO05D002032 9.0e-18 95.1 184 34.8
PSO782G0531 Papaver somniferum HOM05D002035 ORTHO05D002032 1.5e-17 94.4 183 33.3
MD13G1198400 Malus domestica HOM05D002035 ORTHO05D002032 3.4e-17 93.2 179 33.5
SEGI_14834 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 5.8e-17 92.4 155 32.3
CiPaw.07G065300 Carya illinoinensis HOM05D002035 ORTHO05D002032 7.6e-17 92.0 182 31.9
SEGI_32269 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 7.6e-17 92.0 167 34.1
Zm00001eb004630 Zea mays HOM05D002035 ORTHO05D002032 7.6e-17 92.0 161 35.4
DCAR_006621 Daucus carota HOM05D002035 ORTHO05D002032 1.0e-16 91.7 141 37.6
SGA_v2.0_scaffold3661G54375 Striga asiatica HOM05D002035 ORTHO05D002032 1.0e-16 91.7 157 35.0
VMungo0720G2123 Vigna mungo HOM05D002035 ORTHO05D002032 1.0e-16 91.7 164 32.9
ATR0665G594 Amborella trichopoda HOM05D002035 ORTHO05D002032 1.3e-16 91.3 182 35.2
Ciclev10026432m.g Citrus clementina HOM05D002035 ORTHO05D002032 1.3e-16 91.3 141 36.2
Sc13g0004670 Simmondsia chinensis HOM05D002035 ORTHO05D002032 1.3e-16 91.3 174 35.6
TWI12G0984 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 1.3e-16 91.3 171 35.7
PGR142G0901 Punica granatum HOM05D002035 ORTHO05D002032 1.7e-16 90.9 164 37.8
Atru.chr1.3215 Acer truncatum HOM05D002035 ORTHO05D002032 2.2e-16 90.5 148 37.2
Sc09g0003860 Simmondsia chinensis HOM05D002035 ORTHO05D002032 2.9e-16 90.1 186 32.3
Ah.06g192210 Amaranthus hybridus HOM05D002035 ORTHO05D002032 4.9e-16 89.4 172 33.7
FAN17G1868 Fragaria x ananassa HOM05D002035 ORTHO05D002032 4.9e-16 89.4 165 36.4
Peaxi162Scf00282g00124 Petunia axillaris HOM05D002035 ORTHO05D002032 6.5e-16 89.0 141 36.2
Sabra10G0060600 Salix brachista HOM05D002035 ORTHO05D002032 6.5e-16 89.0 179 34.6
Nn1g02424 Nelumbo nucifera HOM05D002035 ORTHO05D002032 8.4e-16 88.6 173 33.5
FAN22G1248 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.4e-15 87.8 173 35.3
GSVIVG01021829001 Vitis vinifera HOM05D002035 ORTHO05D002032 1.4e-15 87.8 155 33.5
FvH4_4g00650 Fragaria vesca HOM05D002035 ORTHO05D002032 1.9e-15 87.4 173 34.7
Nn6g34151 Nelumbo nucifera HOM05D002035 ORTHO05D002032 1.9e-15 87.4 165 32.1
Aqoxy7G01891 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 2.5e-15 87.0 147 33.3
Gohir.A06G059700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 2.5e-15 87.0 144 35.4
CsaV3_2G004250 Cucumis sativus L. HOM05D002035 ORTHO05D002032 3.2e-15 86.7 136 37.5
MSTRG.4057 Avicennia marina HOM05D002035 ORTHO05D002032 4.2e-15 86.3 149 34.9
Gohir.D06G057900 Gossypium hirsutum HOM05D002035 ORTHO05D002032 4.2e-15 86.3 144 35.4
Peaxi162Scf00316g01013 Petunia axillaris HOM05D002035 ORTHO05D002032 4.2e-15 86.3 173 33.5
Sabra08G0119400 Salix brachista HOM05D002035 ORTHO05D002032 4.2e-15 86.3 176 34.1
arahy.Tifrunner.gnm1.ann1.D6QP22 Arachis hypogaea HOM05D002035 ORTHO05D002032 5.5e-15 85.9 163 35.6
arahy.Tifrunner.gnm1.ann1.KCS4U6 Arachis hypogaea HOM05D002035 ORTHO05D002032 5.5e-15 85.9 163 35.6
CANSAT78G1868 Cannabis sativa HOM05D002035 ORTHO05D002032 5.5e-15 85.9 166 32.5
Migut.I00835 Erythranthe guttata HOM05D002035 ORTHO05D002032 5.5e-15 85.9 133 36.8
Gorai.010G068000 Gossypium raimondii HOM05D002035 ORTHO05D002032 5.5e-15 85.9 144 35.4
HanXRQChr11g0326061 Helianthus annuus HOM05D002035 ORTHO05D002032 5.5e-15 85.9 167 33.5
SEGI_01841 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 5.5e-15 85.9 128 35.2
Nitab4.5_0000085g0010 Nicotiana tabacum HOM05D002035 ORTHO05D002032 7.1e-15 85.5 176 34.1
HanXRQChr04g0106661 Helianthus annuus HOM05D002035 ORTHO05D002032 9.3e-15 85.1 175 32.0
HPP92_007928 Vanilla planifolia HOM05D002035 ORTHO05D002032 9.3e-15 85.1 112 39.3
SalBow4G2390 Salvia bowleyana HOM05D002035 ORTHO05D002032 1.2e-14 84.7 190 32.1
Sed0020511 Sechium edule HOM05D002035 ORTHO05D002032 1.2e-14 84.7 187 33.2
ClCG06G006430 Citrullus lanatus HOM05D002035 ORTHO05D002032 1.6e-14 84.3 158 35.4
VMungo0331G0720 Vigna mungo HOM05D002035 ORTHO05D002032 1.6e-14 84.3 141 34.0
Zm00001eb047800 Zea mays HOM05D002035 ORTHO05D002032 1.6e-14 84.3 157 36.9
Potri.008G156800 Populus trichocarpa HOM05D002035 ORTHO05D002032 2.1e-14 84.0 197 32.0
Potri.010G082500 Populus trichocarpa HOM05D002035 ORTHO05D002032 2.1e-14 84.0 184 32.6
Sp7g12860 Schrenkiella parvula HOM05D002035 ORTHO05D002032 2.1e-14 84.0 161 35.4
Solyc03g119900.4 Solanum lycopersicum HOM05D002035 ORTHO05D002032 2.1e-14 84.0 144 33.3
AT4G14746 Arabidopsis thaliana HOM05D002035 ORTHO05D002032 2.7e-14 83.6 159 35.2
Cfa006449 Carpinus fangiana HOM05D002035 ORTHO05D002032 2.7e-14 83.6 155 29.7
Gorai.005G045100 Gossypium raimondii HOM05D002035 ORTHO05D002032 2.7e-14 83.6 177 33.9
Phvul.010G152100 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 2.7e-14 83.6 155 31.0
RcHm_v2.0_Chr4g0387581 Rosa chinensis HOM05D002035 ORTHO05D002032 2.7e-14 83.6 160 34.4
Solyc09g082570.3 Solanum lycopersicum HOM05D002035 ORTHO05D002032 2.7e-14 83.6 167 32.3
CAN.G1402.15 Capsicum annuum HOM05D002035 ORTHO05D002032 3.5e-14 83.2 165 37.0
DCAR_027239 Daucus carota HOM05D002035 ORTHO05D002032 3.5e-14 83.2 159 34.6
Gohir.D02G040700 Gossypium hirsutum HOM05D002035 ORTHO05D002032 3.5e-14 83.2 177 33.9
Nitab4.5_0001046g0030 Nicotiana tabacum HOM05D002035 ORTHO05D002032 3.5e-14 83.2 176 33.5
Sopen09g031430 Solanum pennellii HOM05D002035 ORTHO05D002032 3.5e-14 83.2 152 34.2
COL.COLO4_21556 Corchorus olitorius HOM05D002035 ORTHO05D002032 4.6e-14 82.8 195 33.3
Os11g0582000 Oryza sativa ssp. japonica HOM05D002035 ORTHO05D002032 4.6e-14 82.8 170 30.0
Pp3c3_18430 Physcomitrium patens HOM05D002035 ORTHO05D002032 4.6e-14 82.8 190 30.5
Actinidia08824 Actinidia chinensis HOM05D002035 ORTHO05D002032 6.0e-14 82.4 154 36.4
CARHR221240 Cardamine hirsuta HOM05D002035 ORTHO05D002032 6.0e-14 82.4 159 32.7
Duzib052G0517 Durio zibethinus HOM05D002035 ORTHO05D002032 6.0e-14 82.4 197 32.0
Lj6g0008601 Lotus japonicus HOM05D002035 ORTHO05D002032 6.0e-14 82.4 163 32.5
GSVIVG01018031001 Vitis vinifera HOM05D002035 ORTHO05D002032 6.0e-14 82.4 160 33.1
Atru.chr1.3213 Acer truncatum HOM05D002035 ORTHO05D002032 7.9e-14 82.0 136 36.0
TWI12G0977 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 7.9e-14 82.0 147 33.3
A08p11430 Brassica napus HOM05D002035 ORTHO05D002032 1.0e-13 81.6 152 34.9
Carub.0007s2740 Capsella rubella HOM05D002035 ORTHO05D002032 1.0e-13 81.6 159 34.0
CiPaw.01G196100 Carya illinoinensis HOM05D002035 ORTHO05D002032 1.0e-13 81.6 190 33.2
CARHR221230 Cardamine hirsuta HOM05D002035 ORTHO05D002032 1.3e-13 81.3 163 34.4
Dinv36594 Davidia involucrata HOM05D002035 ORTHO05D002032 1.3e-13 81.3 186 35.5
Duzib212G0666 Durio zibethinus HOM05D002035 ORTHO05D002032 1.8e-13 80.9 182 33.5
FAN17G2404 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.8e-13 80.9 180 33.3
Medtr1g041410 Medicago truncatula HOM05D002035 ORTHO05D002032 1.8e-13 80.9 149 32.9
Thecc.09G117000 Theobroma cacao HOM05D002035 ORTHO05D002032 1.8e-13 80.9 160 34.4
BcaNung00339 Brassica carinata HOM05D002035 ORTHO05D002032 2.3e-13 80.5 157 31.2
Ciclev10002439m.g Citrus clementina HOM05D002035 ORTHO05D002032 2.3e-13 80.5 157 33.1
CsaV3_2G013470 Cucumis sativus L. HOM05D002035 ORTHO05D002032 2.3e-13 80.5 164 34.8
Glyma.02G004800 Glycine max HOM05D002035 ORTHO05D002032 2.3e-13 80.5 175 31.4
Gohir.D09G220900 Gossypium hirsutum HOM05D002035 ORTHO05D002032 2.3e-13 80.5 174 33.3
Gorai.006G241900 Gossypium raimondii HOM05D002035 ORTHO05D002032 2.3e-13 80.5 174 33.3
Glyma.10G244800 Glycine max HOM05D002035 ORTHO05D002032 3.0e-13 80.1 183 32.2
PSO782G4178 Papaver somniferum HOM05D002035 ORTHO05D002032 3.0e-13 80.1 153 34.0
Zm00001eb047790 Zea mays HOM05D002035 ORTHO05D002032 3.0e-13 80.1 156 35.9
BcaC07g37847 Brassica carinata HOM05D002035 ORTHO05D002032 3.9e-13 79.7 152 34.2
A01p22860 Brassica napus HOM05D002035 ORTHO05D002032 3.9e-13 79.7 157 32.5
BraA01t02200Z Brassica rapa HOM05D002035 ORTHO05D002032 3.9e-13 79.7 157 32.5
Gohir.A09G218600 Gossypium hirsutum HOM05D002035 ORTHO05D002032 3.9e-13 79.7 174 33.3
PGSC0003DMG400006454 Solanum tuberosum HOM05D002035 ORTHO05D002032 3.9e-13 79.7 175 32.0
BcaC09g50153 Brassica carinata HOM05D002035 ORTHO05D002032 5.1e-13 79.3 157 31.8
C01p28580 Brassica napus HOM05D002035 ORTHO05D002032 5.1e-13 79.3 157 31.8
BolC1t02771H Brassica oleracea HOM05D002035 ORTHO05D002032 5.1e-13 79.3 157 31.8
FAN14G3418 Fragaria x ananassa HOM05D002035 ORTHO05D002032 6.7e-13 79.0 149 34.9
MBI11_g35356_MAGBIO Magnolia biondii HOM05D002035 ORTHO05D002032 6.7e-13 79.0 152 31.6
TWI73G0018 Tripterygium wilfordii HOM05D002035 ORTHO05D002032 6.7e-13 79.0 167 32.3
AL7G41180 Arabidopsis lyrata HOM05D002035 ORTHO05D002032 8.7e-13 78.6 159 32.7
CiPaw.02G121800 Carya illinoinensis HOM05D002035 ORTHO05D002032 8.7e-13 78.6 197 31.5
Lalb_Chr03g0037431 Lupinus albus HOM05D002035 ORTHO05D002032 8.7e-13 78.6 163 33.1
VMungo0720G0605 Vigna mungo HOM05D002035 ORTHO05D002032 8.7e-13 78.6 165 32.7
Thhalv10026216m.g Eutrema salsugineum HOM05D002035 ORTHO05D002032 1.1e-12 78.2 159 34.0
Phvul.007G061100 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 1.1e-12 78.2 150 33.3
Sed0011123 Sechium edule HOM05D002035 ORTHO05D002032 1.1e-12 78.2 164 35.4
CDE10G1332 Ceratophyllum demersum HOM05D002035 ORTHO05D002032 1.5e-12 77.8 170 31.2
Eucgr.H03419 Eucalyptus grandis HOM05D002035 ORTHO05D002032 1.5e-12 77.8 148 33.1
FAN09G0076 Fragaria x ananassa HOM05D002035 ORTHO05D002032 1.9e-12 77.4 149 34.2
Aqoxy2G03450 Aquilegia oxysepala HOM05D002035 ORTHO05D002032 2.5e-12 77.0 192 27.6
Potri.005G051900 Populus trichocarpa HOM05D002035 ORTHO05D002032 3.3e-12 76.6 132 30.3
THA.LOC104803053 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 3.3e-12 76.6 173 30.6
TPR.G25193 Trifolium pratense HOM05D002035 ORTHO05D002032 3.3e-12 76.6 151 32.5
FAN02G0768 Fragaria x ananassa HOM05D002035 ORTHO05D002032 4.3e-12 76.3 149 33.6
Gohir.A13G104800 Gossypium hirsutum HOM05D002035 ORTHO05D002032 4.3e-12 76.3 174 29.3
MD04G1222300 Malus domestica HOM05D002035 ORTHO05D002032 4.3e-12 76.3 178 31.5
Manes.15G032300 Manihot esculenta HOM05D002035 ORTHO05D002032 4.3e-12 76.3 159 32.7
CSS0016789 Camellia sinensis var. sinensis HOM05D002035 ORTHO05D002032 5.7e-12 75.9 182 30.8
Lj9A505T67 Lonicera japonica HOM05D002035 ORTHO05D002032 5.7e-12 75.9 137 36.5
unitig_899.g14874 Utricularia gibba HOM05D002035 ORTHO05D002032 5.7e-12 75.9 149 34.9
Duzib151G0288 Durio zibethinus HOM05D002035 ORTHO05D002032 7.4e-12 75.5 177 31.6
FvH4_6g03170 Fragaria vesca HOM05D002035 ORTHO05D002032 7.4e-12 75.5 162 32.1
Phvul.007G277600 Phaseolus vulgaris HOM05D002035 ORTHO05D002032 7.4e-12 75.5 141 33.3
Potri.003G057700 Populus trichocarpa HOM05D002035 ORTHO05D002032 7.4e-12 75.5 152 32.9
VMungo0720G3013 Vigna mungo HOM05D002035 ORTHO05D002032 7.4e-12 75.5 173 30.1
Glyma.10G003600 Glycine max HOM05D002035 ORTHO05D002032 9.6e-12 75.1 175 30.3
Sabra05G0045600 Salix brachista HOM05D002035 ORTHO05D002032 9.6e-12 75.1 156 27.6
Sopen03g038780 Solanum pennellii HOM05D002035 ORTHO05D002032 9.6e-12 75.1 166 31.3
THA.LOC104827557 Tarenaya hassleriana HOM05D002035 ORTHO05D002032 9.6e-12 75.1 146 31.5
arahy.Tifrunner.gnm1.ann1.B6YHT2 Arachis hypogaea HOM05D002035 ORTHO05D002032 1.3e-11 74.7 158 31.0
Gohir.D13G108100 Gossypium hirsutum HOM05D002035 ORTHO05D002032 1.3e-11 74.7 152 30.3
Gorai.013G121200 Gossypium raimondii HOM05D002035 ORTHO05D002032 1.3e-11 74.7 152 30.3
Cpa.g.sc44.114 Carica papaya HOM05D002035 ORTHO05D002032 2.1e-11 73.9 152 32.2
BcaB04g18257 Brassica carinata HOM05D002035 ORTHO05D002032 2.8e-11 73.6 143 33.6
Cfa008455 Carpinus fangiana HOM05D002035 ORTHO05D002032 3.7e-11 73.2 164 30.5
Gohir.A02G033803 Gossypium hirsutum HOM05D002035 ORTHO05D002032 3.7e-11 73.2 177 32.2
RcHm_v2.0_Chr3g0451431 Rosa chinensis HOM05D002035 ORTHO05D002032 3.7e-11 73.2 152 31.6
PGR102G2476 Punica granatum HOM05D002035 ORTHO05D002032 4.8e-11 72.8 136 32.4
ECA234G2382 Erigeron canadensis HOM05D002035 ORTHO05D002032 1.1e-10 71.6 168 31.0
Ciclev10005865m.g Citrus clementina HOM05D002035 ORTHO05D002032 1.4e-10 71.2 178 29.2
unitig_21.g20056 Utricularia gibba HOM05D002035 ORTHO05D002032 2.4e-10 70.5 147 33.3
CSS0047801 Camellia sinensis var. sinensis HOM05D002035 ORTHO05D002032 4.1e-10 69.7 158 30.4
Eucgr.F02570 Eucalyptus grandis HOM05D002035 ORTHO05D002032 5.3e-10 69.3 119 31.9
Atru.chr1.3214 Acer truncatum HOM05D002035 ORTHO05D002032 6.9e-10 68.9 130 33.1
PSO063G6019 Papaver somniferum HOM05D002035 ORTHO05D002032 9.0e-10 68.6 152 28.3
SGA_v2.0_scaffold191G40444 Striga asiatica HOM05D002035 ORTHO05D002032 1.2e-09 68.2 113 36.3
AUR62034695 Chenopodium quinoa HOM05D002035 ORTHO05D002032 1.5e-09 67.8 115 38.3
HanXRQChr04g0096381 Helianthus annuus HOM05D002035 ORTHO05D002032 2.0e-09 67.4 133 33.8
SEGI_36008 Sequoiadendron giganteum HOM05D002035 ORTHO05D002032 2.6e-09 67.0 60 50.0
arahy.Tifrunner.gnm1.ann1.LR1XSI Arachis hypogaea HOM05D002035 ORTHO05D002032 3.8e-08 63.2 144 32.6
BraA08t33136Z Brassica rapa HOM05D002035 ORTHO05D002032 3.8e-08 63.2 112 37.5
FAN05G4355 Fragaria x ananassa HOM05D002035 ORTHO05D002032 3.8e-08 63.2 126 29.4
Peaxi162Scf00015g00535 Petunia axillaris HOM05D002035 ORTHO05D002032 8.4e-08 62.0 158 29.1
CAN.G438.100 Capsicum annuum HOM05D002035 ORTHO05D002032 2.5e-07 60.5 156 28.8
BolC8t48234H Brassica oleracea HOM05D002035 ORTHO05D002032 3.2e-07 60.1 108 36.1
Haze_11227 Corylus avellana HOM05D002035 ORTHO05D002032 7.2e-07 58.9 154 30.5
ATR0083G065 Amborella trichopoda HOM05D002035 ORTHO05D002032 1.2e-06 58.2 61 41.0
Lj7A639T57 Lonicera japonica HOM05D002035 ORTHO05D002032 1.2e-06 58.2 135 29.6


User provided reference genes

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