Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.1e-92 343.2 163 100.0
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.0e-62 242.7 161 65.8
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.4e-62 241.9 164 66.5
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.2e-59 233.4 164 65.9
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 7.9e-59 230.7 164 63.4
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.3e-58 229.2 164 64.6
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.9e-58 228.4 164 62.8
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 6.7e-58 227.6 164 61.6
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 8.8e-58 227.3 164 64.6
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.5e-57 226.5 164 63.4
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 2.0e-57 226.1 164 61.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.3e-57 225.3 164 64.0
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 5.7e-57 224.6 164 60.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 7.4e-57 224.2 164 62.8
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 7.4e-57 224.2 164 63.4
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.4e-57 224.2 164 63.4
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 7.4e-57 224.2 166 60.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.7e-57 223.8 161 62.1
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.7e-57 223.8 164 64.0
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 9.7e-57 223.8 164 64.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.3e-56 223.4 164 63.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.3e-56 223.4 164 63.4
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.3e-56 223.4 164 63.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.3e-56 223.4 164 64.0
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.7e-56 223.0 164 62.2
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.7e-56 223.0 164 61.6
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.7e-56 223.0 164 64.0
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 2.2e-56 222.6 164 63.4
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.2e-56 222.6 164 63.4
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.7e-56 221.9 164 59.8
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 3.7e-56 221.9 165 60.6
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 3.7e-56 221.9 164 63.4
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.8e-56 221.5 165 61.2
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 4.8e-56 221.5 164 61.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 4.8e-56 221.5 164 61.0
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.8e-56 221.5 164 62.2
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.3e-56 221.1 164 62.2
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 6.3e-56 221.1 164 62.8
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.3e-56 221.1 164 61.6
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 8.2e-56 220.7 164 61.0
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 8.2e-56 220.7 165 62.4
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 8.2e-56 220.7 164 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.1e-55 220.3 164 61.6
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-55 220.3 164 59.8
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.4e-55 219.9 164 63.4
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.4e-55 219.9 164 59.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-55 219.9 164 61.6
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.8e-55 219.5 164 59.8
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.8e-55 219.5 163 61.3
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 2.4e-55 219.2 164 60.4
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.4e-55 219.2 164 62.2
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.4e-55 219.2 163 63.2
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.4e-55 219.2 164 61.0
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.1e-55 218.8 164 63.4
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.1e-55 218.8 164 62.2
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.1e-55 218.8 164 59.8
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 3.1e-55 218.8 164 61.0
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.1e-55 218.8 164 61.6
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.1e-55 218.4 164 61.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 5.3e-55 218.0 164 61.0
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 9.1e-55 217.2 164 59.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 9.1e-55 217.2 164 61.0
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 9.1e-55 217.2 163 62.0
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 9.1e-55 217.2 164 59.1
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 9.1e-55 217.2 164 59.1
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-54 216.9 164 60.4
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.2e-54 216.9 164 60.4
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.2e-54 216.9 164 61.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.2e-54 216.9 164 59.8
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.5e-54 216.5 164 60.4
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.5e-54 216.5 164 61.6
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.0e-54 216.1 164 61.0
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.0e-54 216.1 164 61.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.6e-54 215.7 164 59.8
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.6e-54 215.7 164 61.6
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.5e-54 215.3 165 58.8
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 3.5e-54 215.3 165 60.0
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.5e-54 215.3 164 59.1
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.9e-54 214.5 164 59.8
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.9e-54 214.5 164 58.5
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 7.7e-54 214.2 164 61.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-53 213.8 164 61.0
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-53 213.4 164 61.0
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.3e-53 213.4 164 57.9
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.3e-53 213.4 164 59.8
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.7e-53 213.0 164 58.5
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.7e-53 213.0 164 62.2
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.7e-53 213.0 164 62.2
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.7e-53 213.0 164 60.4
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-53 212.6 164 61.0
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 3.8e-53 211.8 164 59.1
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.8e-53 211.8 164 58.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 3.8e-53 211.8 165 58.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 5.0e-53 211.5 165 59.4
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 5.0e-53 211.5 164 60.4
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 6.5e-53 211.1 164 59.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 6.5e-53 211.1 163 60.1
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.1e-52 210.3 165 60.6
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.1e-52 210.3 164 59.8
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.2e-52 208.8 165 60.6
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 3.2e-52 208.8 164 56.1
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 4.2e-52 208.4 165 60.0
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 4.2e-52 208.4 162 59.3
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 5.5e-52 208.0 165 59.4
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 9.4e-52 207.2 164 59.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 9.4e-52 207.2 164 57.9
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.6e-51 206.5 165 59.4
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.6e-51 206.5 164 56.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.6e-51 205.3 164 55.5
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 6.1e-51 204.5 164 57.9
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.8e-50 203.0 165 58.8
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 5.2e-50 201.4 144 63.2
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.6e-49 199.1 166 57.8
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.6e-49 199.1 166 57.8
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.3e-49 198.7 167 56.3
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 3.3e-49 198.7 167 57.5
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.3e-49 198.7 165 58.2
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 3.3e-49 198.7 165 58.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.3e-49 198.7 165 57.6
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-49 198.4 165 57.6
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-49 198.4 165 57.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.8e-48 195.7 168 56.0
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 2.8e-48 195.7 168 56.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 3.1e-47 192.2 138 63.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 4.1e-47 191.8 140 64.3
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.6e-46 189.1 168 53.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 3.5e-46 188.7 140 62.9
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.2e-45 186.0 136 61.8
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.2e-45 186.0 163 55.2
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.9e-44 183.0 135 63.0
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 7.2e-44 181.0 136 58.8
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.7e-43 179.1 141 56.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.7e-43 178.3 163 54.6
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 6.1e-43 177.9 135 60.0
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 8.0e-43 177.6 164 52.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.2e-41 173.7 136 60.3
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.8e-40 169.1 153 56.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.0e-34 150.6 117 59.8
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.4e-34 150.2 162 46.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.8e-34 147.9 138 51.4
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.5e-33 146.7 138 50.0
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 6.3e-32 141.4 164 47.6
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 9.1e-31 137.5 164 43.3
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 5.9e-30 134.8 164 45.1
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.7e-29 133.3 211 34.1
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.5e-28 130.2 93 62.4
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 2.2e-24 116.3 91 59.3
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.4e-23 111.7 134 45.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 6.6e-21 104.8 141 39.0
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.8e-19 99.4 136 41.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.6e-19 99.0 98 52.0
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-18 97.4 75 57.3
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-18 96.3 73 57.5
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.2e-16 89.7 75 58.7
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-15 85.9 73 57.5
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.4e-15 85.1 76 48.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.5e-12 77.0 51 62.7
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-11 73.6 70 45.7
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 7.1e-07 58.2 46 50.0
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-06 57.4 70 35.7


User provided reference genes

Program Settings