Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 2.8e-174 615.1 307 100.0
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 1.0e-83 314.3 346 50.0
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.0e-83 312.8 330 52.4
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 3.9e-83 312.4 330 52.4
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 3.9e-83 312.4 329 52.0
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 4.8e-81 305.4 323 52.0
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 8.1e-81 304.7 323 51.4
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.4e-80 303.9 322 50.3
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.4e-80 303.9 332 51.2
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.4e-80 303.9 324 51.5
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.4e-80 303.9 322 51.9
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 2.4e-80 303.1 320 50.3
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 4.0e-80 302.4 333 49.2
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 4.0e-80 302.4 331 50.2
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 6.9e-80 301.6 331 50.2
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 6.9e-80 301.6 316 52.5
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 6.9e-80 301.6 312 51.3
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 9.0e-80 301.2 313 52.1
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.2e-79 300.8 331 50.2
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 2.6e-79 299.7 332 50.0
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 3.4e-79 299.3 319 50.8
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 4.5e-79 298.9 320 49.4
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 4.5e-79 298.9 330 50.0
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 5.8e-79 298.5 323 51.1
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 7.6e-79 298.1 319 50.5
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 7.6e-79 298.1 326 50.0
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 7.6e-79 298.1 312 50.6
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 7.6e-79 298.1 326 49.4
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.0e-78 297.7 323 49.2
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 1.0e-78 297.7 320 49.4
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.0e-78 297.7 320 49.1
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 1.0e-78 297.7 324 50.9
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.0e-78 297.7 322 51.2
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.0e-78 297.7 322 51.2
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 1.0e-78 297.7 330 50.9
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.3e-78 297.4 322 50.6
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 1.3e-78 297.4 322 50.6
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.7e-78 297.0 325 50.2
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.7e-78 297.0 328 50.6
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 2.2e-78 296.6 322 51.2
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 2.2e-78 296.6 320 51.2
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 2.9e-78 296.2 323 48.6
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 2.9e-78 296.2 325 50.2
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 3.8e-78 295.8 315 50.8
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 3.8e-78 295.8 322 50.6
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 3.8e-78 295.8 313 50.5
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 3.8e-78 295.8 314 51.6
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 4.9e-78 295.4 326 50.0
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 6.5e-78 295.0 327 49.5
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 6.5e-78 295.0 333 49.2
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.5e-78 295.0 320 52.2
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 6.5e-78 295.0 323 48.9
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 8.4e-78 294.7 323 48.6
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 8.4e-78 294.7 323 50.2
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 8.4e-78 294.7 323 49.8
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 8.4e-78 294.7 324 49.1
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 8.4e-78 294.7 324 48.8
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 1.1e-77 294.3 323 49.5
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.1e-77 294.3 320 49.4
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.1e-77 294.3 331 48.6
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.4e-77 293.9 330 48.8
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 1.4e-77 293.9 330 48.8
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.4e-77 293.9 327 50.5
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.9e-77 293.5 323 49.2
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.9e-77 293.5 319 50.8
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 1.9e-77 293.5 324 50.6
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.9e-77 293.5 322 49.7
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 2.5e-77 293.1 315 50.5
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.5e-77 293.1 319 51.4
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.5e-77 293.1 325 49.8
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.2e-77 292.7 331 49.5
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.2e-77 292.7 330 49.4
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 4.2e-77 292.4 327 51.1
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 5.5e-77 292.0 314 50.6
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 5.5e-77 292.0 317 50.8
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 5.5e-77 292.0 316 51.3
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 7.1e-77 291.6 323 49.5
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 7.1e-77 291.6 318 50.0
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 1.2e-76 290.8 319 49.2
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.6e-76 290.4 331 48.6
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.6e-76 290.4 314 50.3
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 2.1e-76 290.0 327 47.7
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 2.7e-76 289.7 309 51.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 3.5e-76 289.3 330 48.8
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 4.6e-76 288.9 314 51.0
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 6.0e-76 288.5 330 49.1
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 7.9e-76 288.1 326 49.7
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 1.0e-75 287.7 323 49.2
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.0e-75 287.7 327 47.1
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.3e-75 287.3 323 49.5
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 1.8e-75 287.0 323 49.2
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 2.3e-75 286.6 327 46.8
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 3.0e-75 286.2 332 47.9
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 3.9e-75 285.8 328 47.3
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 5.1e-75 285.4 326 47.2
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 6.7e-75 285.0 317 47.9
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.9e-74 283.5 348 47.1
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 4.3e-74 282.3 321 47.7
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 4.3e-74 282.3 331 46.5
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.3e-73 280.8 328 47.6
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 4.8e-73 278.9 330 47.3
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 4.8e-73 278.9 318 50.0
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.1e-72 276.2 334 47.3
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 4.1e-72 275.8 355 45.6
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 2.0e-71 273.5 328 46.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 2.6e-71 273.1 333 46.8
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.4e-71 272.7 334 46.4
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.4e-71 272.7 334 46.4
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 4.5e-71 272.3 348 46.3
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 1.0e-70 271.2 365 44.4
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.9e-70 269.6 251 53.8
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 2.5e-69 266.5 269 50.9
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.2e-68 264.2 285 50.2
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.1e-68 263.5 323 48.6
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 3.6e-68 262.7 275 51.6
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 3.3e-66 256.1 361 44.6
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 4.1e-64 249.2 299 45.5
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 4.1e-64 249.2 252 52.8
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.0e-63 246.9 241 53.5
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.0e-59 233.0 321 42.1
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.1e-58 231.1 251 49.8
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 1.2e-55 221.1 224 52.7
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 2.7e-52 209.9 323 41.8
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.2e-51 205.7 320 40.0
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 4.4e-50 202.6 333 38.4
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 1.3e-49 201.1 269 43.1
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.1e-44 183.7 151 59.6
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 1.4e-43 181.0 504 28.2
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 3.3e-42 176.4 166 53.0
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.1e-40 171.4 195 49.2
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.2e-39 167.9 162 53.7
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.6e-23 114.4 152 46.1
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 1.0e-22 111.7 116 52.6
Zm00001eb334840 Zea mays HOM05D004236 ORTHO05D004903 2.3e-22 110.5 199 37.7
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 1.8e-19 100.9 206 32.0
Sed0017902 Sechium edule HOM05D004236 ORTHO05D004903 2.6e-18 97.1 166 41.6
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 4.4e-18 96.3 159 37.7
BcaB08g34729 Brassica carinata HOM05D000498 ORTHO05D000354 5.7e-18 95.9 104 48.1
BcaB06g28281 Brassica carinata HOM05D004236 ORTHO05D004903 3.7e-17 93.2 107 48.6
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 3.7e-17 93.2 107 47.7
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 1.6e-15 87.8 245 30.6
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 6.6e-14 82.4 76 53.9
Sopen03g007300 Solanum pennellii HOM05D004236 ORTHO05D004903 1.5e-13 81.3 108 42.6
Oeu048228.1 Olea europaea HOM05D004236 ORTHO05D004903 3.3e-13 80.1 90 50.0
THA.LOC104822507 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 3.3e-13 80.1 88 50.0
HPP92_027367 Vanilla planifolia HOM05D000680 ORTHO05D000738 5.6e-13 79.3 114 41.2
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.0e-11 75.1 56 57.1
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 1.8e-11 74.3 72 48.6
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.3e-09 68.2 91 46.2
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 1.4e-08 64.7 96 39.6
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 1.4e-08 64.7 96 39.6
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 1.4e-08 64.7 96 39.6
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 1.4e-08 64.7 96 39.6
HPP92_023117 Vanilla planifolia HOM05D004236 ORTHO05D004903 2.4e-08 63.9 104 41.3


User provided reference genes

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