Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.1e-273 946.0 488 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 3.3e-169 599.0 425 67.5
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.9e-164 583.2 446 66.1
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 3.7e-160 568.9 439 63.3
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 2.0e-158 563.1 431 65.2
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 4.2e-156 555.4 434 62.4
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 5.5e-156 555.1 430 62.3
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 5.5e-156 555.1 426 64.1
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.2e-155 553.9 425 62.8
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 3.6e-155 552.4 430 63.3
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 2.3e-154 549.7 432 63.2
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 6.7e-154 548.1 428 62.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 8.8e-154 547.7 429 62.2
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.0e-153 546.6 427 62.3
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 2.6e-153 546.2 426 62.4
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 5.7e-153 545.0 426 62.9
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 5.7e-153 545.0 426 61.7
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 7.4e-153 544.7 429 62.0
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 2.2e-152 543.1 431 62.2
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.8e-152 542.7 423 62.2
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.8e-152 542.0 426 62.0
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 6.3e-152 541.6 427 62.1
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 6.3e-152 541.6 426 62.4
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.4e-151 540.4 437 62.5
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.8e-151 540.0 426 60.6
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.4e-151 539.7 426 61.5
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 3.1e-151 539.3 426 61.7
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.1e-151 539.3 429 60.1
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 3.1e-151 539.3 426 61.3
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 4.1e-151 538.9 430 61.4
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 5.3e-151 538.5 419 63.0
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 9.1e-151 537.7 443 60.7
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 9.1e-151 537.7 430 61.4
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 1.2e-150 537.3 455 58.0
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.6e-150 537.0 427 60.4
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 2.0e-150 536.6 426 61.5
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 2.0e-150 536.6 429 60.8
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 2.0e-150 536.6 427 60.9
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.6e-150 536.2 426 60.3
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 2.6e-150 536.2 427 61.6
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 4.5e-150 535.4 426 60.8
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 4.5e-150 535.4 426 62.4
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 5.9e-150 535.0 429 59.7
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.0e-149 534.3 430 60.9
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.3e-149 533.9 426 61.0
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.3e-149 533.9 429 60.6
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 1.3e-149 533.9 433 59.6
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 1.7e-149 533.5 429 60.1
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 2.9e-149 532.7 427 60.0
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 2.9e-149 532.7 427 60.0
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 5.0e-149 531.9 426 60.3
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 5.0e-149 531.9 426 59.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 6.5e-149 531.6 413 63.0
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 8.5e-149 531.2 427 59.5
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 1.1e-148 530.8 446 57.8
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.1e-148 530.8 429 60.4
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.5e-148 530.4 430 61.2
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.5e-148 530.4 426 60.3
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 1.9e-148 530.0 426 60.8
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.9e-148 530.0 426 59.9
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.9e-148 530.0 436 58.3
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 3.2e-148 529.3 426 60.6
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 3.2e-148 529.3 427 60.2
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 3.2e-148 529.3 460 57.4
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 4.2e-148 528.9 426 60.3
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 5.5e-148 528.5 426 60.3
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 7.2e-148 528.1 424 60.1
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 7.2e-148 528.1 464 57.1
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 9.4e-148 527.7 429 59.7
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.6e-147 526.9 451 57.9
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.1e-147 526.6 430 59.8
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.7e-147 526.2 441 58.7
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 4.7e-147 525.4 438 59.1
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 6.1e-147 525.0 447 57.3
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 8.0e-147 524.6 438 58.0
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 4.0e-146 522.3 444 59.2
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 5.2e-146 521.9 430 59.5
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 6.7e-146 521.5 426 59.4
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 6.7e-146 521.5 456 56.4
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.1e-145 520.8 429 59.4
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.5e-145 520.4 457 56.9
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.5e-145 520.4 426 59.9
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 2.0e-145 520.0 430 59.1
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 9.7e-145 517.7 443 58.0
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.8e-143 513.5 436 58.9
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.8e-143 513.5 426 59.6
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.4e-143 513.1 424 60.6
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 7.0e-143 511.5 426 60.3
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 7.0e-143 511.5 437 57.9
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.6e-142 510.4 425 58.6
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 5.9e-142 508.4 426 58.5
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 3.0e-138 496.1 435 57.2
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 4.0e-138 495.7 463 55.1
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.7e-136 490.3 393 60.6
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 3.7e-136 489.2 393 59.5
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 2.0e-134 483.4 426 57.0
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 2.7e-134 483.0 425 57.4
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.0e-133 481.1 482 52.9
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.3e-133 480.7 382 59.4
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 2.2e-133 479.9 446 53.8
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 2.2e-133 479.9 455 53.6
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.3e-130 469.9 388 59.3
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 8.8e-130 468.0 360 62.2
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 2.0e-129 466.8 436 54.8
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 9.8e-129 464.5 405 57.5
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 5.2e-122 442.2 422 53.6
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.6e-118 430.6 422 51.9
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.3e-117 426.8 435 51.5
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 6.2e-115 418.7 320 63.8
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 8.3e-112 408.3 459 48.6
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 6.6e-109 398.7 437 46.5
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.9e-103 380.6 274 66.1
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 1.6e-102 377.5 435 48.7
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.8e-82 310.8 491 39.3
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.8e-77 294.3 417 43.2
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 3.6e-75 286.6 314 47.1
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 3.8e-72 276.6 180 72.8
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 7.9e-70 268.9 368 42.7
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 5.7e-44 183.0 108 75.9
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 1.4e-37 161.8 329 31.9
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.1e-34 152.1 175 47.4
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.8e-34 151.4 368 31.8
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 2.2e-27 127.9 120 56.7
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.8e-27 127.5 137 49.6
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 1.2e-25 122.1 106 58.5
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 2.7e-25 120.9 96 57.3
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 6.8e-21 106.3 53 79.2
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 2.0e-20 104.8 126 42.9
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 2.6e-20 104.4 80 56.2
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.2e-14 85.5 185 31.4
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 1.6e-14 85.1 88 50.0
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 8.0e-14 82.8 65 58.5
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 2.0e-09 68.2 54 57.4
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 4.5e-09 67.0 62 50.0
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-08 65.9 104 40.4
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 3.8e-08 63.9 69 42.0
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 7.3e-07 59.7 66 43.9


User provided reference genes

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