Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 0.0e+00 1130.9 564 100.0
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.4e-181 638.6 567 59.4
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.2e-173 614.0 558 57.7
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.2e-173 614.0 557 57.6
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.4e-173 612.1 557 57.3
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 9.8e-173 610.9 556 57.0
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.7e-172 610.1 512 60.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 6.3e-172 608.2 554 58.1
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 6.3e-172 608.2 557 57.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 8.3e-172 607.8 555 58.2
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.4e-171 607.1 567 57.1
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.4e-171 607.1 553 57.0
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.1e-171 605.9 514 59.7
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 4.1e-171 605.5 560 56.8
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 4.1e-171 605.5 555 56.6
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 7.0e-171 604.7 551 57.4
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 7.0e-171 604.7 568 56.2
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.2e-170 604.0 561 56.3
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 2.0e-170 603.2 560 57.1
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.7e-170 602.8 561 56.1
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.7e-170 602.8 573 56.2
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.9e-170 601.7 561 56.1
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 5.9e-170 601.7 569 56.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.0e-169 600.9 554 57.2
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.0e-169 600.9 554 56.7
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.0e-169 600.9 568 57.0
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.0e-169 600.9 562 56.4
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-169 600.9 560 56.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-169 600.9 560 56.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-169 600.9 560 56.2
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.3e-169 600.5 560 55.9
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.3e-169 600.5 509 61.1
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.3e-169 599.7 560 55.9
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.3e-169 599.7 570 55.6
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.9e-169 599.4 578 55.9
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.9e-169 599.4 568 56.3
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.9e-169 599.4 561 56.1
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 3.8e-169 599.0 559 56.5
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 5.0e-169 598.6 562 56.4
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 8.6e-169 597.8 560 56.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.1e-168 597.4 565 56.5
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.1e-168 597.4 551 57.7
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.9e-168 596.7 534 58.6
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.5e-168 596.3 510 60.0
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.5e-168 596.3 554 56.1
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.5e-168 596.3 557 56.7
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 3.3e-168 595.9 552 56.7
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 4.2e-168 595.5 562 54.8
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 5.5e-168 595.1 566 56.4
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 7.2e-168 594.7 511 59.3
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 7.2e-168 594.7 567 56.3
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 9.5e-168 594.3 562 55.2
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.2e-167 594.0 560 56.2
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.2e-167 594.0 561 55.8
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 1.2e-167 594.0 560 56.6
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.6e-167 593.6 553 56.1
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 2.1e-167 593.2 560 55.7
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 6.1e-167 591.7 561 55.4
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 6.1e-167 591.7 554 56.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 8.0e-167 591.3 554 56.5
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.0e-166 590.9 561 56.9
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.0e-166 590.9 561 55.6
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.4e-166 590.5 567 55.7
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.8e-166 590.1 508 60.2
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.0e-166 589.3 555 55.1
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 4.0e-166 589.0 561 55.8
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 4.0e-166 589.0 560 57.1
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 4.0e-166 589.0 560 54.8
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 5.2e-166 588.6 560 55.9
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 5.2e-166 588.6 560 56.1
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 6.8e-166 588.2 554 56.9
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 6.8e-166 588.2 508 60.4
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 8.9e-166 587.8 573 55.0
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.2e-165 587.4 551 56.4
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-165 587.4 553 55.9
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.6e-165 586.3 555 56.8
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 3.4e-165 585.9 553 56.1
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 3.4e-165 585.9 553 55.5
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 4.4e-165 585.5 560 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.7e-165 585.1 555 58.2
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 9.8e-165 584.3 512 58.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.7e-164 583.6 509 59.5
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 4.9e-164 582.0 554 55.2
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 6.3e-164 581.6 508 57.3
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.4e-163 580.5 549 55.2
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.8e-163 580.1 563 54.7
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 2.4e-163 579.7 508 56.9
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 5.4e-163 578.6 555 54.6
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 5.4e-163 578.6 509 59.7
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 7.0e-163 578.2 571 53.8
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 2.0e-162 576.6 568 54.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 2.0e-162 576.6 552 55.6
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 2.7e-162 576.2 555 54.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 3.5e-162 575.9 526 56.8
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.0e-161 574.3 580 52.8
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 2.3e-161 573.2 555 54.6
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 6.6e-161 571.6 508 58.5
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 6.6e-161 571.6 548 55.7
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.1e-160 570.9 557 55.1
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.5e-160 569.7 561 54.5
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.3e-160 569.3 552 55.3
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 3.3e-160 569.3 516 57.8
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.3e-160 568.2 510 58.2
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 2.1e-159 566.6 523 57.6
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.8e-159 566.2 554 54.3
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.8e-159 566.2 511 58.5
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.8e-159 566.2 547 54.5
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.0e-158 562.8 568 54.0
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.7e-156 555.8 559 53.0
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.1e-155 554.3 497 58.4
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 5.4e-155 552.0 569 53.8
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 3.5e-154 549.3 555 53.3
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.1e-152 544.3 554 53.1
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.5e-152 543.9 557 52.6
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 7.3e-152 541.6 494 57.9
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 2.1e-151 540.0 574 51.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.8e-150 537.0 567 51.7
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.8e-150 537.0 596 49.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 2.3e-150 536.6 496 56.9
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.5e-149 531.6 507 53.8
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.4e-147 527.3 596 49.2
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.2e-147 526.2 441 60.3
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.4e-142 510.8 507 52.7
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.7e-137 493.8 553 48.8
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.8e-134 481.9 559 48.7
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.9e-131 473.8 390 60.8
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 9.2e-131 471.5 391 61.6
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.2e-125 454.5 436 56.9
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 7.1e-123 445.3 391 60.1
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 2.8e-119 433.3 338 63.9
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 4.6e-98 362.8 302 61.3
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.3e-88 329.7 295 56.3
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 9.1e-86 322.0 326 53.4
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.7e-82 310.5 324 51.2
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.7e-82 309.7 290 54.5
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.3e-79 301.6 298 54.4
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 4.5e-77 293.1 260 58.1
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.1e-75 288.5 246 59.8
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.2e-71 274.2 230 63.5
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.8e-70 271.2 231 60.2
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 3.1e-70 270.4 247 58.7
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 3.0e-65 253.8 272 52.2
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.2e-65 253.1 229 55.9
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 6.8e-41 172.9 143 62.2
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-40 172.2 138 59.4
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.0e-40 171.4 137 59.1
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.6e-40 171.0 138 59.4
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.2e-39 167.9 138 58.7
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.3e-36 158.7 128 58.6
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 7.1e-30 136.3 98 65.3
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 2.1e-29 134.8 170 45.3
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 6.6e-28 129.8 98 62.2
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-16 91.3 72 61.1
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.7e-15 88.6 429 25.4
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.9e-15 87.8 64 65.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 6.4e-15 86.7 64 65.6
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.9e-14 85.1 64 64.1
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 2.4e-14 84.7 495 24.2
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-13 82.4 65 58.5
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.6e-13 82.0 65 58.5
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 4.6e-13 80.5 56 66.1
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.1e-11 75.9 54 61.1
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 5.6e-11 73.6 556 24.3
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.1e-09 69.3 109 40.4
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.7e-07 62.0 48 62.5
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 2.9e-07 61.2 54 50.0


User provided reference genes

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