Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.6e-139 498.8 268 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.1e-97 360.5 265 70.6
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 6.0e-96 354.8 265 69.4
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 9.0e-92 340.9 262 65.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.4e-89 333.6 262 66.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 6.9e-84 314.7 266 63.5
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 9.9e-83 310.8 263 59.7
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.2e-82 309.7 262 60.3
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.9e-82 309.3 263 60.8
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 6.4e-82 308.1 263 60.5
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.4e-82 308.1 263 62.4
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 8.4e-82 307.8 263 60.5
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.9e-81 306.6 262 59.9
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.2e-81 305.4 262 60.7
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 5.4e-81 305.1 270 60.4
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 9.3e-81 304.3 263 59.7
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.2e-80 303.9 263 58.9
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.2e-80 303.9 263 61.6
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.5e-80 302.4 263 58.9
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 3.5e-80 302.4 261 59.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 4.6e-80 302.0 262 59.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 6.0e-80 301.6 261 58.2
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 7.9e-80 301.2 263 58.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 7.9e-80 301.2 262 59.2
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 7.9e-80 301.2 263 61.2
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 7.9e-80 301.2 261 58.6
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.0e-79 300.8 263 59.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.3e-79 300.4 263 58.9
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.3e-79 300.4 263 58.9
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 2.3e-79 299.7 263 59.7
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.0e-79 299.3 264 58.3
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.9e-79 298.9 263 58.2
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 3.9e-79 298.9 263 58.6
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 5.1e-79 298.5 263 60.5
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 6.7e-79 298.1 264 59.8
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 6.7e-79 298.1 263 58.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 6.7e-79 298.1 263 59.7
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 8.7e-79 297.7 264 59.8
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 8.7e-79 297.7 263 58.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 8.7e-79 297.7 263 58.2
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.1e-78 297.4 263 59.7
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.5e-78 297.0 262 57.6
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.5e-78 297.0 263 60.1
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.5e-78 297.0 263 60.1
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-78 296.6 263 59.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.9e-78 296.6 264 60.2
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.9e-78 296.6 263 58.6
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.9e-78 296.6 263 58.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.5e-78 296.2 264 57.2
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.5e-78 296.2 261 58.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 2.5e-78 296.2 263 58.9
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.3e-78 295.8 264 59.8
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 3.3e-78 295.8 266 60.9
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 4.3e-78 295.4 264 59.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 4.3e-78 295.4 263 59.7
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 5.6e-78 295.0 263 58.9
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 7.4e-78 294.7 262 56.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 7.4e-78 294.7 263 57.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 9.6e-78 294.3 264 58.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 9.6e-78 294.3 263 57.8
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 9.6e-78 294.3 262 58.8
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 9.6e-78 294.3 264 58.7
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 9.6e-78 294.3 264 58.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-77 293.9 264 58.7
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-77 293.9 264 58.3
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.3e-77 293.9 263 57.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-77 293.5 263 58.9
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-77 293.5 263 58.9
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-77 293.5 263 58.9
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.6e-77 293.5 263 58.2
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.6e-77 293.5 264 57.2
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.1e-77 293.1 262 59.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.1e-77 293.1 263 58.6
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.1e-77 293.1 262 58.0
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.8e-77 292.7 264 58.0
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.8e-77 292.7 263 57.8
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.8e-77 292.7 266 57.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.8e-77 292.7 262 58.4
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 6.2e-77 291.6 263 57.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 6.2e-77 291.6 263 57.4
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-76 290.8 264 58.0
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.1e-76 290.8 264 58.0
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.1e-76 290.8 262 57.6
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.1e-76 290.8 263 57.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.1e-76 290.8 263 58.6
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.4e-76 290.4 262 58.4
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-76 290.4 263 58.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-76 290.4 264 58.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.8e-76 290.0 264 58.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.8e-76 290.0 262 56.5
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.4e-76 289.7 262 58.4
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-76 289.3 263 57.0
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 4.0e-76 288.9 262 57.6
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 5.3e-76 288.5 267 58.1
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 6.9e-76 288.1 262 58.8
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 6.9e-76 288.1 261 57.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 6.9e-76 288.1 273 56.4
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.2e-75 287.3 280 55.0
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.5e-75 287.0 262 57.3
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.5e-75 287.0 264 57.2
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.0e-75 286.6 265 57.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.6e-75 286.2 262 56.9
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.4e-75 285.8 274 55.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 4.5e-75 285.4 264 56.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.5e-75 285.4 264 58.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 9.9e-75 284.3 264 57.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.7e-74 283.5 264 57.6
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 8.4e-74 281.2 263 56.3
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.1e-73 280.8 263 57.0
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.1e-73 280.8 263 56.7
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.2e-72 277.3 262 57.3
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.6e-72 276.9 293 52.9
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.1e-72 276.6 264 55.3
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 6.0e-72 275.0 306 50.7
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.7e-71 271.6 263 52.9
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 8.7e-71 271.2 277 52.3
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.6e-70 268.5 263 55.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.6e-69 266.9 253 54.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.1e-69 266.5 262 52.7
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.7e-69 265.8 326 47.9
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.1e-68 264.2 313 49.8
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 5.3e-68 261.9 358 45.3
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 1.5e-67 260.4 267 56.2
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.7e-66 256.9 241 56.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.2e-64 250.8 262 51.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 3.4e-59 232.6 241 55.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 7.9e-56 221.5 242 53.3
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 8.8e-55 218.0 268 49.6
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 2.0e-54 216.9 246 52.0
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 2.5e-54 216.5 245 51.8
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 7.4e-54 214.9 268 48.9
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 7.4e-54 214.9 477 34.0
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 7.4e-54 214.9 477 34.0
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 9.7e-54 214.5 204 55.4
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-52 211.1 269 48.3
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 6.9e-52 208.4 269 47.6
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 9.1e-52 208.0 162 62.3
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-51 206.8 269 48.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.3e-47 193.4 229 52.0
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-45 186.8 215 51.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.6e-43 179.9 243 46.5
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.5e-43 179.5 412 33.3
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 5.0e-42 175.6 270 44.1
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 8.5e-42 174.9 247 46.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.4e-41 174.1 136 64.0
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.9e-41 173.7 129 69.8
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 4.2e-41 172.6 130 69.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 8.0e-40 168.3 272 43.4
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.1e-36 157.9 136 58.1
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-36 157.5 240 41.7
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-35 154.5 267 40.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.5e-35 152.9 263 37.6
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.5e-33 147.5 136 57.4
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.9e-33 147.1 148 54.1
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.8e-31 140.6 96 70.8
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.8e-29 132.5 101 66.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 5.3e-28 129.0 265 34.3
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.8e-26 122.9 123 52.8
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.1e-25 121.3 263 33.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.5e-25 119.0 162 44.4
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 8.0e-24 115.2 290 28.6
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.4e-22 109.4 147 44.9
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 7.7e-19 98.6 69 71.0
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.8e-15 85.5 147 40.1
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.7e-14 82.4 59 66.1
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 7.5e-14 82.0 70 60.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 4.1e-12 76.3 48 79.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 5.4e-12 75.9 48 77.1
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 5.4e-12 75.9 48 77.1
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-11 74.7 48 77.1
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.0e-11 73.9 70 52.9
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-11 73.6 48 77.1
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-10 70.5 46 73.9
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.5e-09 67.8 130 38.5
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.8e-08 63.5 111 37.8
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.5e-06 57.8 93 44.1
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 4.4e-06 56.2 53 52.8


User provided reference genes

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