Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 4.4e-95 351.3 179 100.0
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.9e-53 213.0 143 69.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.3e-51 206.8 146 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.1e-48 197.2 136 68.4
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.0e-46 190.7 156 61.5
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.7e-28 128.6 95 65.3
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.1e-24 117.5 137 46.0
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 5.9e-23 111.7 135 43.0
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 3.8e-22 109.0 139 41.0
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 8.5e-22 107.8 143 41.3
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 8.5e-22 107.8 133 40.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.5e-21 107.1 136 37.5
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.5e-21 107.1 133 41.4
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.9e-21 106.7 133 42.1
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.5e-21 106.3 133 39.8
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 2.5e-21 106.3 133 41.4
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 3.2e-21 105.9 133 39.8
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 4.2e-21 105.5 141 39.0
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 5.5e-21 105.1 139 39.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 7.2e-21 104.8 128 46.1
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 7.2e-21 104.8 133 39.1
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 9.4e-21 104.4 137 35.8
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.2e-20 104.0 139 37.4
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.2e-20 104.0 133 39.8
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.6e-20 103.6 133 40.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.6e-20 103.6 133 38.3
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.6e-20 103.6 133 39.1
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.1e-20 103.2 139 39.6
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.1e-20 103.2 133 39.8
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.1e-20 103.2 137 40.9
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.7e-20 102.8 137 38.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-20 102.8 137 38.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.7e-20 102.8 133 37.6
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 2.7e-20 102.8 133 36.8
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-20 102.8 133 39.1
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 3.6e-20 102.4 133 37.6
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 3.6e-20 102.4 133 39.1
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 3.6e-20 102.4 135 39.3
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.6e-20 102.4 130 40.8
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 4.7e-20 102.1 137 38.0
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.7e-20 102.1 133 39.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 4.7e-20 102.1 139 39.6
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 4.7e-20 102.1 139 39.6
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.1e-20 101.7 133 39.1
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.0e-19 100.9 139 40.3
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.4e-19 100.5 133 39.1
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.4e-19 100.5 127 40.9
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.4e-19 100.5 133 40.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.8e-19 100.1 137 37.2
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.8e-19 100.1 139 38.1
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.8e-19 100.1 139 36.0
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.8e-19 100.1 130 39.2
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.3e-19 99.8 137 37.2
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.3e-19 99.8 133 39.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 3.0e-19 99.4 137 38.0
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 3.0e-19 99.4 147 40.1
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 3.0e-19 99.4 137 37.2
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 3.0e-19 99.4 137 37.2
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.0e-19 99.4 133 36.8
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 3.0e-19 99.4 137 38.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 3.0e-19 99.4 135 38.5
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 3.0e-19 99.4 133 39.8
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.0e-19 99.4 137 37.2
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 4.0e-19 99.0 139 36.0
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 4.0e-19 99.0 133 38.3
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.0e-19 99.0 133 38.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 4.0e-19 99.0 133 36.8
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 4.0e-19 99.0 138 37.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.0e-19 99.0 136 38.2
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 5.2e-19 98.6 133 37.6
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 5.2e-19 98.6 135 40.0
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.2e-19 98.6 147 38.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.2e-19 98.6 147 38.8
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 6.8e-19 98.2 125 41.6
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.8e-19 98.2 112 42.9
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 6.8e-19 98.2 139 38.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 8.8e-19 97.8 133 37.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 8.8e-19 97.8 130 36.9
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 8.8e-19 97.8 130 36.9
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 8.8e-19 97.8 113 44.2
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.2e-18 97.4 139 35.3
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.2e-18 97.4 139 38.1
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.2e-18 97.4 133 37.6
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-18 97.4 130 36.2
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.2e-18 97.4 130 36.2
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.2e-18 97.4 143 33.6
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.5e-18 97.1 133 37.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.5e-18 97.1 142 37.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.5e-18 97.1 134 38.1
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.5e-18 97.1 136 38.2
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.0e-18 96.7 137 35.8
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 2.0e-18 96.7 135 36.3
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.0e-18 96.7 139 37.4
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.6e-18 96.3 130 36.2
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 2.6e-18 96.3 139 36.7
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 2.6e-18 96.3 133 36.8
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.4e-18 95.9 130 35.4
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.4e-18 95.9 137 36.5
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 3.4e-18 95.9 136 37.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.4e-18 95.5 128 43.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 4.4e-18 95.5 137 37.2
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.7e-18 95.1 135 36.3
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 5.7e-18 95.1 133 36.1
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 9.8e-18 94.4 139 35.3
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 9.8e-18 94.4 139 35.3
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 9.8e-18 94.4 139 35.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 9.8e-18 94.4 139 35.3
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 9.8e-18 94.4 130 38.5
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 9.8e-18 94.4 142 36.6
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 9.8e-18 94.4 130 36.2
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.3e-17 94.0 133 34.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.3e-17 94.0 127 39.4
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.7e-17 93.6 111 39.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.7e-17 93.6 113 41.6
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.2e-17 93.2 127 37.8
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.2e-17 93.2 111 38.7
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.8e-17 92.8 133 36.8
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 3.7e-17 92.4 134 36.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.7e-17 92.4 139 32.4
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.7e-17 92.4 153 34.0
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 3.7e-17 92.4 111 39.6
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.7e-17 92.4 132 35.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 6.3e-17 91.7 132 35.6
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.3e-17 91.3 117 40.2
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.1e-16 90.9 141 37.6
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.1e-16 90.9 136 35.3
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.1e-16 90.9 134 36.6
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.1e-16 90.9 117 38.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.4e-16 90.5 138 34.8
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.4e-16 90.5 134 38.8
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.4e-16 89.7 111 38.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 2.4e-16 89.7 111 38.7
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.4e-16 89.7 135 36.3
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.1e-16 89.4 111 40.5
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.4e-16 88.6 107 41.1
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 7.0e-16 88.2 139 36.0
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 9.1e-16 87.8 113 37.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.2e-15 87.4 131 34.4
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.0e-15 86.7 113 37.2
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.3e-14 84.0 184 29.3
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.3e-14 84.0 158 31.6
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 2.9e-14 82.8 119 37.8
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.5e-14 81.6 133 33.8
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.5e-13 80.5 135 33.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.2e-12 77.4 118 39.8
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-12 77.0 93 39.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.4e-11 73.9 136 30.1
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.4e-11 73.9 126 32.5
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 6.8e-11 71.6 116 35.3
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 4.4e-10 68.9 91 39.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 9.8e-10 67.8 92 41.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.8e-08 63.5 101 35.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 4.1e-08 62.4 95 34.7
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 5.4e-08 62.0 133 30.8
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 5.0e-06 55.5 56 44.6


User provided reference genes

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