Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.5e-150 535.4 269 100.0
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-52 211.1 177 56.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.1e-52 209.5 264 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 3.5e-51 206.1 167 56.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.4e-47 194.1 223 51.1
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.5e-46 190.7 187 54.5
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.0e-46 190.3 200 52.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 3.3e-46 189.5 200 52.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-45 187.6 184 52.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 2.2e-45 186.8 185 51.9
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 4.8e-45 185.7 183 54.1
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.8e-45 185.7 188 50.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 4.8e-45 185.7 228 46.1
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.1e-44 184.5 190 50.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.1e-44 184.5 193 52.8
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.1e-44 184.5 190 50.5
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.4e-44 184.1 195 51.3
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.4e-44 184.1 190 50.0
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.4e-44 184.1 190 50.0
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.8e-44 183.7 194 50.5
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.4e-44 183.3 189 50.8
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.4e-44 183.3 187 53.5
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 4.1e-44 182.6 182 52.7
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.3e-44 182.2 191 52.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 7.0e-44 181.8 185 53.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 7.0e-44 181.8 191 49.7
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 9.1e-44 181.4 183 51.4
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.6e-43 180.6 183 51.9
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.6e-43 180.6 217 48.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.6e-43 180.6 216 47.2
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 3.5e-43 179.5 202 50.5
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 3.5e-43 179.5 189 51.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.5e-43 179.5 190 50.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 5.9e-43 178.7 193 51.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.9e-43 178.7 224 47.3
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 7.7e-43 178.3 186 51.6
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.0e-42 177.9 190 50.5
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.3e-42 177.6 183 51.4
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.7e-42 177.2 234 46.2
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.7e-42 177.2 204 49.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.7e-42 177.2 219 46.1
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.2e-42 176.8 192 51.6
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.2e-42 176.8 206 46.1
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 2.9e-42 176.4 185 50.8
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.8e-42 176.0 191 48.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.8e-42 176.0 210 46.7
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 5.0e-42 175.6 185 51.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 5.0e-42 175.6 210 46.7
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 6.5e-42 175.3 189 50.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 6.5e-42 175.3 224 46.9
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 8.5e-42 174.9 209 46.4
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.1e-41 174.5 227 45.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-41 174.5 190 48.9
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.1e-41 174.5 224 46.9
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-41 174.5 155 59.4
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-41 174.1 192 49.0
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.5e-41 174.1 219 43.4
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.5e-41 174.1 194 47.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.9e-41 173.7 198 49.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.9e-41 173.7 188 48.9
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.9e-41 173.7 190 49.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.5e-41 173.3 210 46.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 3.2e-41 172.9 252 42.9
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.2e-41 172.6 220 45.0
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.5e-41 172.2 188 48.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.2e-41 171.8 188 48.4
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.2e-41 171.8 188 48.4
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.2e-41 171.8 220 44.5
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 9.4e-41 171.4 189 49.2
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.4e-41 171.4 206 45.6
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.4e-41 171.4 212 43.9
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 9.4e-41 171.4 212 43.9
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-40 171.0 185 48.1
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.2e-40 171.0 185 48.1
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.6e-40 170.6 195 49.2
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.6e-40 170.6 254 41.7
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.1e-40 170.2 155 56.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.7e-40 169.9 199 47.7
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.6e-40 169.5 191 49.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.6e-40 169.5 195 47.7
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.6e-40 169.5 155 54.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.7e-40 169.1 173 53.2
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 6.1e-40 168.7 212 46.2
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 8.0e-40 168.3 195 48.7
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.0e-39 167.9 144 55.6
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-39 167.5 156 53.8
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.4e-39 167.5 191 47.1
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.8e-39 167.2 188 47.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 2.3e-39 166.8 194 47.9
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.0e-39 166.0 213 46.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 4.0e-39 166.0 217 47.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 6.8e-39 165.2 213 44.1
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.8e-39 165.2 195 47.7
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.8e-39 164.9 204 45.1
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.2e-38 164.5 155 52.9
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-38 164.5 155 52.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-38 164.5 155 52.9
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.2e-38 164.5 155 52.9
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.2e-38 164.5 197 46.7
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 1.5e-38 164.1 144 54.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.0e-38 163.7 145 54.5
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 2.0e-38 163.7 206 45.6
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 2.0e-38 163.7 206 45.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.6e-38 163.3 228 42.5
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.4e-38 162.5 145 53.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.4e-38 162.5 211 44.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 5.7e-38 162.2 214 44.9
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 9.8e-38 161.4 196 45.9
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.3e-37 161.0 196 45.9
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.3e-37 161.0 211 46.9
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.7e-37 159.5 220 43.6
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 6.3e-37 158.7 195 45.6
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.4e-36 157.5 195 46.7
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.4e-36 157.5 198 45.5
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.4e-36 157.5 184 48.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.0e-35 153.7 207 42.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 2.0e-35 153.7 248 39.5
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 2.0e-35 153.7 229 44.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 3.5e-35 152.9 156 50.6
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.5e-35 152.5 268 37.7
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 5.9e-35 152.1 157 52.2
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 5.9e-35 152.1 151 49.7
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.3e-34 150.2 176 48.9
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.5e-33 146.7 201 43.3
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.8e-32 143.3 144 50.7
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 4.7e-32 142.5 162 48.8
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.3e-31 140.2 157 52.2
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 4.0e-31 139.4 189 45.0
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 2.0e-30 137.1 177 41.8
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.0e-30 137.1 167 48.5
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 3.4e-30 136.3 240 36.7
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.3e-29 134.4 178 47.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.1e-28 131.3 155 47.1
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.0e-27 127.1 135 50.4
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.5e-27 126.3 182 44.5
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.1e-25 121.3 160 41.2
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-25 120.6 123 48.0
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 4.7e-24 115.9 219 35.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.4e-22 109.8 108 50.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 7.0e-20 102.1 168 34.5
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 7.8e-19 98.6 202 34.7
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-18 97.8 123 49.6
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.0e-18 96.7 130 50.8
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.3e-17 92.8 60 63.3
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 5.6e-17 92.4 94 44.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 2.8e-16 90.1 131 46.6
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.4e-15 87.8 126 46.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.5e-14 84.3 136 33.8
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.4e-14 82.8 53 56.6
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-13 80.9 126 46.8
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 6.4e-13 79.0 112 37.5
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.9e-12 77.4 100 40.0
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.4e-12 77.0 95 47.4
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.4e-12 75.9 134 41.0
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.6e-11 74.3 123 44.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.6e-11 74.3 143 39.9
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 2.0e-11 73.9 134 38.8
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-10 71.2 87 48.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.9e-09 67.4 143 37.8
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.3e-09 66.2 99 45.5
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.6e-08 64.3 120 37.5
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.4e-07 61.2 77 39.0
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.2e-06 58.2 66 54.5
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.4e-06 56.6 83 38.6
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 7.5e-06 55.5 52 50.0
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 9.9e-06 55.1 51 45.1


User provided reference genes

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