Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 8.1e-100 367.9 318 100.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.0e-53 213.8 308 68.2
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 5.7e-53 212.2 306 67.6
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.3e-52 211.1 316 66.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 8.2e-52 208.4 309 59.2
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.1e-51 208.0 308 57.1
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.8e-51 207.2 309 62.8
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 4.1e-51 206.1 316 63.0
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 4.1e-51 206.1 308 65.3
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 5.3e-51 205.7 309 59.2
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 5.3e-51 205.7 316 63.3
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 5.3e-51 205.7 316 63.3
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.0e-51 205.3 308 64.9
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.0e-51 205.3 308 64.9
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.0e-51 205.3 308 64.9
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.1e-51 204.9 307 65.8
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 1.2e-50 204.5 316 64.6
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.2e-50 204.5 307 67.1
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-50 204.1 316 57.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.6e-50 204.1 316 57.3
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.0e-50 203.8 310 56.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.0e-50 203.8 313 58.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 2.0e-50 203.8 308 62.3
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.6e-50 203.4 307 66.4
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 2.6e-50 203.4 308 66.9
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.5e-50 203.0 316 57.3
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 3.5e-50 203.0 310 56.8
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.5e-50 203.0 308 64.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 4.5e-50 202.6 316 56.0
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 4.5e-50 202.6 310 61.6
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 4.5e-50 202.6 309 61.2
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 5.9e-50 202.2 316 57.9
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 5.9e-50 202.2 310 56.5
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.3e-49 201.1 308 55.2
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.3e-49 201.1 308 64.3
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.7e-49 200.7 312 56.7
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.2e-49 200.3 309 66.0
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.9e-49 199.9 308 61.4
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 6.5e-49 198.7 309 60.5
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 6.5e-49 198.7 312 58.7
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 8.5e-49 198.4 307 64.2
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 8.5e-49 198.4 312 58.7
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.1e-48 198.0 311 65.6
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.1e-48 198.0 308 59.1
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-48 198.0 307 62.5
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.5e-48 197.6 308 55.5
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.5e-48 197.6 308 58.8
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-48 197.2 316 56.6
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-48 197.2 316 56.6
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.9e-48 197.2 308 63.3
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.9e-48 197.2 307 64.8
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.5e-48 196.8 308 57.8
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 2.5e-48 196.8 311 59.8
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 3.2e-48 196.4 308 64.6
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.2e-48 196.4 308 65.9
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.2e-48 196.1 308 63.3
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 5.5e-48 195.7 306 57.5
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 5.5e-48 195.7 308 66.9
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 5.5e-48 195.7 311 58.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 7.2e-48 195.3 308 64.3
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 9.4e-48 194.9 308 65.6
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.6e-47 194.1 312 62.5
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 2.7e-47 193.4 313 57.5
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 2.7e-47 193.4 309 65.4
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 3.6e-47 193.0 308 66.2
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 6.1e-47 192.2 307 64.5
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 8.0e-47 191.8 313 55.9
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 8.0e-47 191.8 308 49.4
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.0e-46 191.4 307 62.2
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.8e-46 190.7 316 55.7
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.8e-46 190.7 308 65.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.0e-46 189.5 283 69.3
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 5.2e-46 189.1 308 57.5
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 5.2e-46 189.1 308 55.8
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 6.7e-46 188.7 308 60.7
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 8.8e-46 188.3 313 65.2
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.2e-45 188.0 307 64.5
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.2e-45 188.0 284 71.1
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.2e-45 188.0 321 48.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.0e-45 187.2 318 56.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.0e-45 187.2 283 67.1
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 2.6e-45 186.8 289 68.5
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 2.6e-45 186.8 338 45.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.6e-45 186.8 308 54.9
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 2.6e-45 186.8 312 48.4
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 7.5e-45 185.3 284 70.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.7e-44 184.1 308 54.2
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.7e-44 184.1 308 54.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.7e-44 184.1 292 61.3
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 2.2e-44 183.7 312 59.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.8e-44 183.3 283 68.6
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-43 181.0 235 54.5
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.8e-43 180.6 308 55.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-43 179.9 293 56.3
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.2e-42 177.9 308 55.2
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 3.5e-42 176.4 308 51.6
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 3.5e-42 176.4 285 67.0
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.0e-41 174.9 226 57.1
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.9e-41 173.3 314 53.5
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 5.0e-41 172.6 308 60.4
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 5.0e-41 172.6 294 63.6
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 8.5e-41 171.8 288 58.3
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.5e-40 171.0 308 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 3.2e-40 169.9 312 51.9
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 9.4e-40 168.3 323 51.7
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.2e-39 167.9 313 51.4
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 6.1e-39 165.6 317 52.7
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 6.1e-39 165.6 307 55.4
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.2e-37 161.4 308 48.4
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.2e-37 161.4 308 48.4
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.5e-37 161.0 308 46.8
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.4e-37 159.8 313 57.2
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.7e-37 159.1 308 52.6
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 9.8e-37 158.3 222 63.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 9.8e-37 158.3 222 50.9
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 4.8e-36 156.0 308 48.1
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.4e-35 154.5 137 56.2
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.1e-35 153.3 222 45.0
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.7e-34 150.2 301 45.8
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.9e-33 146.7 313 47.3
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.9e-32 144.1 313 54.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 5.5e-32 142.5 180 52.8
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.2e-31 141.4 311 48.2
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-31 141.0 180 51.7
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 6.1e-31 139.0 180 42.2
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-30 138.3 180 42.2
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.0e-30 138.3 343 40.2
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 4.4e-29 132.9 300 56.7
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.7e-29 132.5 180 48.9
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 3.7e-28 129.8 133 51.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.7e-28 129.8 284 53.9
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.9e-28 129.4 119 57.1
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 5.4e-27 125.9 119 53.8
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 5.9e-26 122.5 308 46.8
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.3e-25 121.3 117 54.7
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 6.6e-25 119.0 183 59.6
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.1e-24 118.2 114 55.3
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 2.6e-21 107.1 184 48.4
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-20 104.8 184 41.8
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 4.1e-19 99.8 212 69.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 5.4e-19 99.4 95 49.5
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 3.9e-17 93.2 231 35.1
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.9e-17 93.2 79 62.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-16 91.3 79 60.8
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-16 91.3 79 60.8
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.1e-15 87.4 155 39.4
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 4.7e-15 86.3 138 40.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.4e-14 84.7 138 39.9
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-14 83.6 151 41.1
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.1e-14 83.6 209 61.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 8.9e-14 82.0 138 36.2
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.9e-14 82.0 72 59.7
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-12 76.6 72 55.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-11 74.3 156 42.3
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.6e-10 71.2 150 49.3
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.5e-10 70.1 67 56.7
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 3.9e-09 66.6 67 55.2
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 8.6e-09 65.5 145 33.1
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.8e-06 57.8 61 50.8
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 8.9e-06 55.5 47 55.3


User provided reference genes

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