Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 2.0e-67 259.2 153 100.0
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 4.4e-19 98.6 141 44.7
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 5.8e-19 98.2 138 44.9
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 7.5e-19 97.8 143 45.5
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 2.2e-18 96.3 153 43.8
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.2e-18 96.3 143 49.0
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 2.9e-18 95.9 141 44.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 3.7e-18 95.5 143 44.1
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.1e-17 94.0 143 44.1
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.1e-17 94.0 155 41.9
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.2e-17 92.4 162 38.3
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 5.4e-17 91.7 154 40.9
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 7.1e-17 91.3 160 50.0
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 9.2e-17 90.9 143 41.3
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 9.2e-17 90.9 161 39.8
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.6e-16 90.1 144 39.6
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 3.5e-16 89.0 143 40.6
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 3.5e-16 89.0 143 40.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 4.6e-16 88.6 166 38.6
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.0e-16 88.2 159 39.6
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.0e-16 88.2 160 39.4
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.0e-15 87.4 147 40.1
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.3e-15 87.0 134 43.3
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.3e-15 87.0 155 40.0
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.3e-15 87.0 165 38.2
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.7e-15 86.7 146 42.5
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.7e-15 86.7 146 42.5
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.7e-15 86.7 166 35.5
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.7e-15 86.7 147 40.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.7e-15 86.7 140 42.1
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.7e-15 86.7 161 36.0
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.3e-15 86.3 143 42.7
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 2.3e-15 86.3 145 38.6
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 2.3e-15 86.3 145 41.4
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.0e-15 85.9 145 40.0
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.0e-15 85.9 141 40.4
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.0e-15 85.9 146 37.7
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 3.9e-15 85.5 141 41.1
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.9e-15 85.5 145 37.2
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.6e-15 84.7 163 37.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 6.6e-15 84.7 132 43.2
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 6.6e-15 84.7 140 40.0
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 6.6e-15 84.7 168 38.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 6.6e-15 84.7 165 38.8
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 6.6e-15 84.7 165 38.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 6.6e-15 84.7 175 37.7
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 8.6e-15 84.3 166 35.5
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.5e-14 83.6 148 39.9
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.5e-14 83.6 147 38.1
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.9e-14 83.2 165 37.6
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 1.9e-14 83.2 140 37.1
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.5e-14 82.8 160 39.4
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 3.3e-14 82.4 146 36.3
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 3.3e-14 82.4 171 44.4
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 4.3e-14 82.0 156 39.7
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 4.3e-14 82.0 150 38.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 4.3e-14 82.0 161 34.8
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 4.3e-14 82.0 168 44.6
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 5.6e-14 81.6 154 37.0
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.6e-14 81.6 164 37.8
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 5.6e-14 81.6 134 38.8
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 9.5e-14 80.9 150 37.3
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 9.5e-14 80.9 163 36.2
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 9.5e-14 80.9 146 36.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 9.5e-14 80.9 135 38.5
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.2e-13 80.5 157 34.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.6e-13 80.1 135 39.3
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.6e-13 80.1 160 36.9
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.6e-13 80.1 164 34.1
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.6e-13 80.1 149 37.6
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 2.1e-13 79.7 145 37.9
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.8e-13 79.3 145 39.3
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.6e-13 79.0 170 36.5
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 3.6e-13 79.0 145 38.6
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 4.7e-13 78.6 158 36.1
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.7e-13 78.6 148 35.8
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 4.7e-13 78.6 169 37.3
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.7e-13 78.6 141 37.6
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 6.2e-13 78.2 149 34.9
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 8.1e-13 77.8 148 39.2
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 8.1e-13 77.8 145 38.6
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 8.1e-13 77.8 148 39.9
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.1e-12 77.4 161 38.5
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.1e-12 77.4 153 37.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.8e-12 76.6 159 35.8
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.8e-12 76.6 147 37.4
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 3.1e-12 75.9 144 36.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.2e-11 73.9 143 37.8
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.2e-11 73.9 164 36.0
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-11 73.2 152 45.4
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-11 73.2 152 45.4
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.8e-11 71.6 128 45.3
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 9.9e-11 70.9 157 35.0
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.9e-11 70.9 146 36.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-10 69.7 168 33.3
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-10 69.7 150 32.0
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 2.9e-10 69.3 132 37.9
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 3.8e-10 68.9 92 46.7
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 3.8e-10 68.9 145 34.5
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 4.9e-10 68.6 158 35.4
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.9e-10 68.6 171 31.6
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 8.4e-10 67.8 89 44.9
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.9e-09 66.6 127 33.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.9e-09 66.6 148 39.2
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.9e-09 66.6 65 56.9
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 3.2e-09 65.9 161 32.9
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.2e-09 65.9 73 50.7
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.1e-09 65.5 133 36.8
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.1e-09 64.7 133 36.1
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.2e-09 64.3 133 36.8
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.6e-08 63.5 133 36.8
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.7e-08 62.8 64 53.1
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.7e-08 62.8 57 57.9
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 4.6e-08 62.0 86 45.3
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 4.6e-08 62.0 66 53.0
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 7.8e-08 61.2 106 48.1
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.7e-07 60.1 120 35.8
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.3e-07 59.7 129 32.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 3.9e-07 58.9 106 47.2
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.6e-07 58.2 125 33.6
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.5e-06 56.2 72 44.4
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 3.3e-06 55.8 140 40.0
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.3e-06 55.8 83 39.8
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 3.3e-06 55.8 158 30.4


User provided reference genes

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