Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 3.2e-142 508.4 265 100.0
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.3e-87 327.0 256 62.1
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.8e-84 316.6 255 63.1
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 3.0e-79 299.3 253 61.3
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 7.3e-78 294.7 255 58.4
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 9.5e-78 294.3 254 58.7
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 2.8e-77 292.7 242 59.9
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.7e-77 292.0 256 59.0
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 4.7e-77 292.0 242 60.7
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 6.2e-77 291.6 253 59.3
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 8.0e-77 291.2 242 61.6
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 8.0e-77 291.2 256 58.2
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.4e-76 290.4 250 58.0
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 1.8e-76 290.0 250 59.6
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 2.3e-76 289.7 240 62.9
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.3e-76 289.7 247 59.1
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 4.0e-76 288.9 242 61.2
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 5.2e-76 288.5 243 61.3
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 5.2e-76 288.5 242 61.2
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.2e-76 288.5 243 60.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 5.2e-76 288.5 257 58.8
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 8.9e-76 287.7 261 56.7
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 8.9e-76 287.7 242 61.6
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.2e-75 287.3 242 59.9
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.5e-75 287.0 255 56.1
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.5e-75 287.0 242 61.2
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.0e-75 286.6 242 61.2
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.6e-75 286.2 242 60.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.6e-75 286.2 242 60.7
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 4.4e-75 285.4 256 56.2
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 4.4e-75 285.4 256 57.4
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 5.8e-75 285.0 256 57.0
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 5.8e-75 285.0 243 59.3
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 5.8e-75 285.0 242 60.3
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 5.8e-75 285.0 247 58.7
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 7.5e-75 284.6 243 58.8
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.5e-75 284.6 248 57.7
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 7.5e-75 284.6 256 56.6
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 7.5e-75 284.6 244 61.1
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 9.8e-75 284.3 248 57.7
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.3e-74 283.9 242 60.3
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.3e-74 283.9 241 59.8
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.3e-74 283.9 242 60.7
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.7e-74 283.5 242 60.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.2e-74 283.1 242 59.5
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 4.9e-74 282.0 240 60.4
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 4.9e-74 282.0 242 58.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.9e-74 282.0 242 58.3
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 4.9e-74 282.0 244 59.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 8.3e-74 281.2 242 59.1
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 8.3e-74 281.2 256 55.5
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 1.1e-73 280.8 242 58.3
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.1e-73 280.8 242 59.1
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.9e-73 280.0 256 56.2
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.9e-73 280.0 252 57.1
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 2.4e-73 279.6 256 56.6
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 3.2e-73 279.3 242 59.5
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 3.2e-73 279.3 242 58.7
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 4.1e-73 278.9 242 56.6
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 5.4e-73 278.5 242 57.0
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 5.4e-73 278.5 296 52.4
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 9.2e-73 277.7 246 58.9
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.2e-72 277.3 243 58.8
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.6e-72 276.9 242 57.0
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.1e-72 276.6 255 56.5
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 3.5e-72 275.8 242 58.3
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 3.5e-72 275.8 257 54.9
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 4.6e-72 275.4 242 56.6
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.3e-71 273.9 259 54.4
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.3e-71 273.9 242 55.4
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.3e-71 273.9 259 54.1
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.7e-71 273.5 259 54.4
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.7e-71 273.5 254 55.1
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.3e-71 273.1 278 53.6
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.0e-71 272.7 246 56.5
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.0e-71 272.7 259 54.4
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 5.1e-71 271.9 256 53.9
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 8.6e-71 271.2 262 53.4
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.1e-70 270.8 266 54.5
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 4.3e-70 268.9 242 58.7
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 4.3e-70 268.9 242 55.8
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 5.6e-70 268.5 252 55.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 5.6e-70 268.5 239 57.7
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 6.2e-69 265.0 240 56.7
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 6.2e-69 265.0 240 55.8
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 6.2e-69 265.0 240 56.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.1e-68 264.2 240 56.2
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 1.4e-68 263.8 240 57.1
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.4e-68 263.8 240 55.8
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 3.1e-68 262.7 240 55.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 3.1e-68 262.7 240 55.8
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 6.8e-68 261.5 313 47.3
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 1.2e-67 260.8 240 55.0
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.0e-67 260.0 240 55.4
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.0e-67 260.0 234 57.7
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.6e-67 259.6 240 55.0
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 2.6e-67 259.6 239 54.8
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 3.4e-67 259.2 242 56.6
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 9.9e-67 257.7 218 60.1
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.7e-66 256.9 220 61.4
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 4.9e-66 255.4 250 53.6
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 9.2e-65 251.1 218 58.7
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 9.2e-65 251.1 218 58.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.2e-64 250.8 307 45.9
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.5e-62 243.0 220 58.2
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 6.8e-60 235.0 234 53.8
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.1e-57 227.6 230 53.0
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.9e-57 226.9 190 63.7
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 7.8e-56 221.5 173 64.2
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 3.0e-55 219.5 180 61.7
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 8.7e-55 218.0 178 63.5
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.1e-54 217.6 197 58.4
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 3.6e-53 212.6 185 58.4
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 6.2e-53 211.8 202 55.0
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 8.1e-53 211.5 213 54.9
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.6e-51 206.5 192 56.8
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 3.3e-46 189.5 284 41.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.1e-45 186.8 150 61.3
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 6.2e-45 185.3 261 45.2
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.2e-42 176.8 152 56.6
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 3.9e-39 166.0 172 52.9
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 8.1e-37 158.3 149 55.0
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 4.2e-33 146.0 143 53.8
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 4.8e-29 132.5 242 36.0
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.6e-16 90.9 86 59.3
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 2.5e-14 83.6 62 61.3
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 5.1e-07 59.3 72 43.1
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 6.7e-07 58.9 59 47.5


User provided reference genes

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