Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.0e-130 469.2 243 100.0
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 8.8e-54 214.5 206 51.9
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 2.6e-53 213.0 201 53.2
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 2.6e-53 213.0 224 51.3
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 5.7e-53 211.8 246 47.6
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 1.7e-52 210.3 256 48.8
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 2.8e-52 209.5 231 50.2
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 6.3e-52 208.4 249 46.6
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 8.2e-52 208.0 242 47.1
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 8.2e-52 208.0 208 51.9
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.4e-51 206.5 200 52.5
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 2.4e-51 206.5 242 47.1
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.1e-51 206.1 200 52.5
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.1e-51 206.1 246 45.9
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 4.1e-51 205.7 230 47.4
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 5.3e-51 205.3 239 48.1
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 5.3e-51 205.3 246 47.6
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 7.0e-51 204.9 197 52.3
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.2e-50 204.1 225 48.4
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.5e-50 203.8 200 51.5
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 5.9e-50 201.8 200 50.5
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.0e-49 201.1 251 46.2
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.0e-49 201.1 251 46.2
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.0e-49 201.1 197 51.8
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.3e-49 200.7 236 44.9
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.3e-49 200.7 200 47.5
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 2.2e-49 199.9 259 44.4
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 2.2e-49 199.9 244 45.9
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 2.9e-49 199.5 243 44.9
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 2.9e-49 199.5 241 45.6
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 3.8e-49 199.1 200 50.0
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 6.5e-49 198.4 197 50.3
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 8.5e-49 198.0 200 47.0
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 8.5e-49 198.0 227 46.3
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.1e-48 197.6 222 47.3
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.1e-48 197.6 219 46.6
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.5e-48 197.2 241 45.6
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.9e-48 196.8 204 49.5
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.9e-48 196.8 201 51.2
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.5e-48 196.4 247 44.1
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 3.2e-48 196.1 196 49.5
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 4.2e-48 195.7 199 49.2
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 9.4e-48 194.5 201 48.8
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 9.4e-48 194.5 251 43.0
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.2e-47 194.1 203 47.3
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.6e-47 193.7 196 49.0
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.6e-47 193.7 196 49.0
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 1.6e-47 193.7 180 52.2
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 2.7e-47 193.0 196 48.5
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 3.6e-47 192.6 223 47.5
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.7e-47 192.2 239 45.2
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 4.7e-47 192.2 196 49.0
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 4.7e-47 192.2 241 46.1
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 4.7e-47 192.2 194 47.9
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 4.7e-47 192.2 246 42.7
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 4.7e-47 192.2 230 43.5
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 8.0e-47 191.4 241 45.6
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 1.0e-46 191.0 247 43.7
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.4e-46 190.7 220 45.9
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.8e-46 190.3 203 47.8
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 1.8e-46 190.3 199 48.2
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 1.8e-46 190.3 227 44.5
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.3e-46 189.9 255 43.1
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 2.3e-46 189.9 246 42.3
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.0e-46 189.5 197 46.7
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 3.0e-46 189.5 246 42.3
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.9e-46 189.1 197 46.7
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 3.9e-46 189.1 256 41.4
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 3.9e-46 189.1 270 41.1
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 5.2e-46 188.7 243 42.8
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 5.2e-46 188.7 196 46.4
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 6.7e-46 188.3 199 48.2
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 8.8e-46 188.0 251 40.6
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.1e-45 187.6 201 47.8
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 1.1e-45 187.6 247 42.1
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 1.1e-45 187.6 200 49.0
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.1e-45 187.6 241 42.3
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 2.0e-45 186.8 203 47.3
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 2.0e-45 186.8 180 50.6
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 5.7e-45 185.3 197 47.2
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.2e-44 183.3 245 41.6
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 3.7e-44 182.6 189 47.6
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 3.7e-44 182.6 250 40.4
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 3.7e-44 182.6 244 41.0
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 4.8e-44 182.2 170 52.4
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 4.8e-44 182.2 199 47.2
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.1e-43 181.0 228 43.9
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 4.1e-43 179.1 166 52.4
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 1.2e-42 177.6 166 53.0
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 1.3e-41 174.1 166 51.8
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 2.5e-40 169.9 178 50.0
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.6e-39 166.0 170 46.5
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 8.0e-39 164.9 173 49.7
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 8.8e-38 161.4 273 38.5
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 1.2e-37 161.0 210 43.3
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 3.4e-37 159.5 178 46.1
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 5.7e-37 158.7 182 46.2
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 1.3e-36 157.5 240 40.0
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 2.2e-36 156.8 174 47.1
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 4.8e-36 155.6 243 37.0
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 4.8e-36 155.6 207 41.5
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.8e-28 129.8 159 44.7
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.7e-26 123.2 131 49.6
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 6.6e-25 118.6 200 33.5
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 6.1e-23 112.1 80 63.8
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.0e-22 111.3 80 61.2
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.4e-22 110.9 80 63.8
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 7.5e-21 105.1 83 59.0
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 7.5e-21 105.1 81 59.3
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 3.7e-20 102.8 121 44.6
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 3.2e-19 99.8 207 30.0
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 1.3e-17 94.4 165 35.8
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.9e-17 93.2 154 33.8
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.9e-16 90.5 193 32.6
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 3.3e-16 89.7 121 36.4
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 5.6e-16 89.0 229 30.6
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.8e-14 84.0 207 27.5
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.5e-13 80.9 311 26.7
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 2.4e-11 73.6 152 30.9
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 9.2e-11 71.6 187 32.1
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 5.0e-09 65.9 139 33.1
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 6.6e-09 65.5 55 49.1
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 3.3e-08 63.2 96 35.4
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 8.9e-06 55.1 40 65.0


User provided reference genes

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