Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 6.0e-120 434.1 208 100.0
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 1.2e-107 393.3 208 87.5
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 5.7e-102 374.4 209 83.7
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.1e-100 370.2 205 80.0
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 206 79.6
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 2.7e-96 355.5 203 77.8
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 8.8e-95 350.5 202 78.7
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.5e-94 349.7 205 75.6
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.2e-93 345.9 201 77.6
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 3.7e-93 345.1 205 74.1
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 4.8e-93 344.7 202 74.8
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 8.2e-93 344.0 200 75.5
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.1e-92 343.6 204 75.5
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.8e-92 342.8 202 77.2
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 3.1e-92 342.0 202 76.7
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 3.1e-92 342.0 202 75.7
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 4.1e-92 341.7 202 77.2
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 5.3e-92 341.3 204 76.0
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 7.0e-92 340.9 204 75.0
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.2e-91 340.1 204 75.0
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.6e-91 339.0 204 74.0
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 3.4e-91 338.6 201 75.6
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 4.5e-91 338.2 204 75.0
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 5.9e-91 337.8 204 73.5
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 7.7e-91 337.4 202 74.3
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 1.0e-90 337.0 204 74.5
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.7e-90 336.3 204 75.0
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.2e-90 335.9 200 76.5
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 2.2e-90 335.9 202 74.8
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.9e-90 335.5 204 73.5
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 2.9e-90 335.5 202 74.8
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 5.0e-90 334.7 199 74.4
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 6.5e-90 334.3 202 74.3
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 6.5e-90 334.3 204 73.0
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.9e-89 332.8 204 73.0
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.9e-89 332.8 204 73.0
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.9e-89 332.8 204 73.0
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.5e-89 332.4 198 76.8
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 2.5e-89 332.4 204 73.0
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.2e-89 332.0 202 75.2
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 4.2e-89 331.6 204 74.5
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 5.5e-89 331.3 201 74.6
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 7.2e-89 330.9 204 71.1
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 7.2e-89 330.9 202 74.8
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 9.4e-89 330.5 202 74.8
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 9.4e-89 330.5 202 75.2
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 9.4e-89 330.5 204 72.5
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 1.2e-88 330.1 201 73.1
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.2e-88 330.1 202 72.8
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.2e-88 330.1 201 73.1
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.2e-88 330.1 202 72.8
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.2e-88 330.1 199 74.4
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.6e-88 329.7 202 75.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 1.6e-88 329.7 203 73.9
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.6e-88 329.7 204 73.5
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 1.6e-88 329.7 202 73.8
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.6e-88 329.7 197 76.1
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.1e-88 329.3 202 72.8
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.1e-88 329.3 198 75.3
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.7e-88 328.9 204 71.1
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.7e-88 328.9 202 74.8
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.7e-88 328.2 204 72.5
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.7e-88 328.2 203 73.9
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 4.7e-88 328.2 204 73.0
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 6.1e-88 327.8 203 73.4
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 6.1e-88 327.8 204 74.0
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 8.0e-88 327.4 196 74.0
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.0e-88 327.4 201 74.1
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.0e-87 327.0 204 72.1
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.0e-87 327.0 204 72.1
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.0e-87 327.0 201 73.6
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.4e-87 326.6 202 72.3
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.4e-87 326.6 203 72.4
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 1.8e-87 326.2 204 70.1
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.8e-87 326.2 201 73.6
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.8e-87 326.2 202 74.8
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.8e-87 326.2 202 73.3
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 2.3e-87 325.9 205 71.2
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 2.3e-87 325.9 202 72.8
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 3.0e-87 325.5 196 73.5
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.0e-87 325.5 196 73.5
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 3.0e-87 325.5 202 71.8
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 3.9e-87 325.1 204 70.1
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.9e-87 325.1 204 72.5
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 5.2e-87 324.7 202 72.3
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.2e-87 324.7 201 73.1
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 5.2e-87 324.7 204 72.1
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 6.7e-87 324.3 204 71.6
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 6.7e-87 324.3 204 72.5
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.1e-86 323.6 199 73.4
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 1.5e-86 323.2 199 72.4
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.0e-86 322.8 204 70.1
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.0e-86 322.8 204 71.6
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 2.6e-86 322.4 207 71.0
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 3.3e-86 322.0 196 72.4
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 3.3e-86 322.0 193 75.1
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 5.7e-86 321.2 202 72.8
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 5.7e-86 321.2 202 71.8
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 5.7e-86 321.2 207 71.0
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.3e-85 320.1 204 71.6
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.7e-85 319.7 225 68.0
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 2.2e-85 319.3 201 68.7
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 2.2e-85 319.3 197 73.1
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.2e-85 319.3 202 71.3
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 2.2e-85 319.3 205 70.2
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 4.1e-84 315.1 207 70.0
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.2e-83 313.5 204 72.1
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.6e-83 312.4 224 65.2
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 3.5e-83 312.0 204 69.6
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 4.2e-81 305.1 213 67.6
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 2.3e-79 299.3 203 66.0
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 3.0e-79 298.9 203 66.5
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 5.2e-79 298.1 290 52.1
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.8e-77 292.4 202 67.8
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 8.2e-77 290.8 171 78.9
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.1e-76 290.4 205 67.3
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 1.2e-75 287.0 169 76.9
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.0e-75 286.2 166 78.3
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 3.5e-75 285.4 169 76.9
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 5.9e-75 284.6 242 58.3
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.0e-63 247.3 142 80.3
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.8e-63 246.5 417 37.2
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 1.8e-63 246.5 145 77.2
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 7.5e-62 241.1 145 73.8
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 4.1e-60 235.3 145 73.1
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.1e-57 227.3 202 56.4
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 3.0e-50 202.6 113 79.6
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 6.2e-48 194.9 195 46.2
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 3.4e-46 189.1 195 47.7
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 4.4e-46 188.7 125 71.2
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.7e-43 179.5 108 78.7
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 3.9e-42 175.6 195 46.7
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 5.4e-36 155.2 142 52.1
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.3e-34 149.8 102 66.7
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.1e-28 131.0 74 78.4
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.1e-28 131.0 92 63.0
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 2.4e-28 129.8 79 74.7
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 5.4e-28 128.6 87 64.4
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 8.7e-18 94.7 60 70.0
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 3.6e-16 89.4 59 67.8
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.1e-15 87.8 68 54.4
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 7.6e-14 81.6 57 57.9
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.2e-13 80.1 53 67.9
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 3.9e-10 69.3 40 85.0
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 1.2e-06 57.8 59 49.2


User provided reference genes

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