Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-136 489.6 235 100.0
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.4e-86 320.9 153 98.0
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-85 319.7 151 99.3
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.9e-84 314.3 153 96.1
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-78 296.6 190 77.4
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.5e-77 291.6 188 79.3
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-75 286.2 188 76.6
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.9e-60 234.6 153 75.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 9.1e-48 194.5 151 60.9
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.9e-46 189.5 156 59.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 6.5e-46 188.3 157 57.3
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-45 187.2 152 58.6
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.9e-45 186.8 152 59.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 3.2e-45 186.0 167 52.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.2e-45 186.0 155 56.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 3.2e-45 186.0 152 59.9
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 4.2e-45 185.7 160 55.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 4.2e-45 185.7 149 58.4
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 7.2e-45 184.9 150 56.7
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.2e-45 184.9 156 57.1
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 7.2e-45 184.9 150 57.3
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.2e-45 184.9 88 100.0
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 7.2e-45 184.9 162 54.3
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.2e-44 184.1 162 51.9
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.2e-44 184.1 151 58.9
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.1e-44 183.3 162 53.1
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 3.6e-44 182.6 150 56.0
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 3.6e-44 182.6 154 55.8
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.6e-44 182.6 156 57.1
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.7e-44 182.2 153 58.8
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 4.7e-44 182.2 152 59.2
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.1e-44 181.8 152 56.6
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 8.0e-44 181.4 156 56.4
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 8.0e-44 181.4 162 57.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 8.0e-44 181.4 156 57.7
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.0e-43 181.0 174 53.4
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.0e-43 181.0 155 54.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.4e-43 180.6 162 53.7
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.8e-43 180.3 153 56.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.3e-43 179.9 153 56.2
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.0e-43 179.5 153 53.6
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.0e-43 179.5 160 55.0
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 3.0e-43 179.5 162 56.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 3.0e-43 179.5 157 56.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 4.0e-43 179.1 154 56.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 4.0e-43 179.1 153 55.6
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 4.0e-43 179.1 153 58.2
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 4.0e-43 179.1 153 55.6
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 4.0e-43 179.1 147 57.8
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 5.2e-43 178.7 152 55.3
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 5.2e-43 178.7 162 53.7
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 8.8e-43 177.9 164 52.4
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.8e-43 177.9 99 88.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 8.8e-43 177.9 155 55.5
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 1.1e-42 177.6 155 54.2
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.1e-42 177.6 152 57.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.6e-42 176.4 152 54.6
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.6e-42 176.4 155 54.2
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 3.3e-42 176.0 156 53.2
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 3.3e-42 176.0 162 51.9
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.3e-42 176.0 153 56.9
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.4e-42 175.6 162 51.9
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 5.7e-42 175.3 153 57.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 5.7e-42 175.3 157 57.3
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.7e-42 175.3 160 53.1
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 5.7e-42 175.3 155 54.8
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 7.5e-42 174.9 155 54.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 7.5e-42 174.9 152 55.9
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 9.7e-42 174.5 162 50.6
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 9.7e-42 174.5 152 53.9
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 9.7e-42 174.5 152 53.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 9.7e-42 174.5 156 54.5
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 9.7e-42 174.5 150 57.3
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.7e-42 174.5 150 57.3
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.3e-41 174.1 156 52.6
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.3e-41 174.1 162 51.9
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 1.3e-41 174.1 156 55.1
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.7e-41 173.7 151 53.0
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.7e-41 173.7 155 53.5
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 2.2e-41 173.3 153 56.9
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.2e-41 173.3 150 56.7
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.2e-41 173.3 162 52.5
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.8e-41 172.2 153 55.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 4.8e-41 172.2 142 58.5
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 6.3e-41 171.8 162 51.2
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.1e-40 171.0 174 50.0
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.8e-40 170.2 151 51.0
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.8e-40 170.2 159 52.2
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.8e-40 170.2 157 53.5
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.4e-40 169.9 153 52.9
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.4e-40 169.9 147 56.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 3.1e-40 169.5 146 56.8
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.1e-40 169.5 162 48.8
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 4.1e-40 169.1 152 52.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 4.1e-40 169.1 152 52.0
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 4.1e-40 169.1 150 55.3
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 5.3e-40 168.7 163 53.4
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 9.1e-40 167.9 172 47.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.2e-39 167.5 153 55.6
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 2.0e-39 166.8 152 52.6
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.5e-39 166.0 149 50.3
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 7.7e-39 164.9 155 49.0
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.0e-38 164.5 159 52.8
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.3e-38 164.1 160 47.5
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.7e-38 163.7 150 49.3
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.7e-38 163.7 149 50.3
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.2e-38 163.3 165 48.5
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.2e-38 163.3 152 51.3
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 3.8e-38 162.5 145 57.2
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 5.0e-38 162.2 153 49.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.5e-37 159.8 150 52.7
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.1e-36 156.8 181 44.8
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 3.6e-36 156.0 143 53.1
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.4e-35 154.1 144 49.3
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 5.2e-35 152.1 153 52.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 8.8e-35 151.4 144 52.1
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 3.4e-34 149.4 134 52.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.4e-34 149.1 149 49.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 5.7e-34 148.7 125 59.2
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.3e-33 147.5 135 54.1
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 6.3e-33 145.2 121 56.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 8.3e-33 144.8 160 45.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 5.4e-32 142.1 122 56.6
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 1.0e-30 137.9 153 45.8
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 8.5e-30 134.8 122 50.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 5.5e-29 132.1 164 43.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 8.0e-28 128.3 113 54.9
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 2.0e-26 123.6 147 45.6
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 5.4e-24 115.5 152 41.4
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 7.0e-24 115.2 113 49.6
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.7e-23 113.2 182 36.8
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.3e-17 94.4 76 60.5
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.4e-16 90.9 74 55.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.0e-14 84.7 104 41.3
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 4.0e-11 72.8 70 45.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-09 67.8 118 38.1


User provided reference genes

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