Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 3.7e-191 671.4 339 100.0
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.1e-97 359.4 348 56.0
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.2e-94 349.4 348 54.3
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 4.2e-94 349.0 349 51.6
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 3.0e-92 342.8 348 50.9
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 9.6e-91 337.8 343 49.3
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 9.6e-91 337.8 343 49.3
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 9.6e-91 337.8 350 49.1
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 3.6e-90 335.9 347 49.0
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 4.8e-90 335.5 347 48.1
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 4.0e-89 332.4 348 49.1
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.6e-88 329.7 349 50.1
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 3.4e-88 329.3 348 49.4
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 5.8e-88 328.6 346 50.0
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 7.6e-88 328.2 356 47.2
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 7.6e-88 328.2 349 48.7
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 7.6e-88 328.2 346 49.7
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 1.3e-87 327.4 348 49.4
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 1.7e-87 327.0 350 46.9
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.7e-87 327.0 349 51.9
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.7e-87 327.0 346 49.1
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 2.9e-87 326.2 343 49.3
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 2.9e-87 326.2 350 46.3
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 3.8e-87 325.9 346 49.4
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 4.9e-87 325.5 355 46.8
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 8.4e-87 324.7 348 51.1
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 1.1e-86 324.3 348 48.0
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.4e-86 323.9 351 47.0
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.9e-86 323.6 348 48.3
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 7.1e-86 321.6 346 48.3
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 7.1e-86 321.6 352 46.3
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 3.5e-85 319.3 351 46.7
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 3.5e-85 319.3 353 46.5
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 3.5e-85 319.3 352 48.3
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 6.0e-85 318.5 347 51.6
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 1.0e-84 317.8 345 49.3
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 1.3e-84 317.4 346 48.3
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 1.8e-84 317.0 348 48.0
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 5.1e-84 315.5 346 50.3
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 1.1e-83 314.3 348 51.1
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 1.5e-83 313.9 350 47.1
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 3.3e-83 312.8 348 51.7
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 7.4e-83 311.6 348 52.0
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 9.6e-83 311.2 348 47.4
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 2.1e-82 310.1 348 46.8
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.8e-82 309.7 348 47.4
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 4.8e-82 308.9 345 46.7
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 4.8e-82 308.9 344 50.9
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 6.2e-82 308.5 347 50.1
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 8.1e-82 308.1 343 48.1
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.1e-81 307.8 348 50.3
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 1.4e-81 307.4 347 51.6
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 1.4e-81 307.4 347 47.0
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 1.8e-81 307.0 348 45.4
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 1.8e-81 307.0 352 49.1
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.8e-81 307.0 348 51.1
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 1.8e-81 307.0 349 49.3
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.8e-81 307.0 348 48.0
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 3.1e-81 306.2 348 47.7
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 3.1e-81 306.2 348 46.8
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 3.1e-81 306.2 348 46.3
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 4.0e-81 305.8 351 45.9
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 4.0e-81 305.8 346 49.4
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 4.0e-81 305.8 332 48.2
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 6.9e-81 305.1 347 49.9
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 6.9e-81 305.1 374 44.1
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 1.2e-80 304.3 347 45.8
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 1.2e-80 304.3 348 50.6
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 1.5e-80 303.9 347 46.1
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 1.5e-80 303.9 348 47.7
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 2.6e-80 303.1 351 44.7
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 2.6e-80 303.1 348 46.0
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 4.5e-80 302.4 348 48.9
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 5.8e-80 302.0 369 46.9
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 7.6e-80 301.6 346 46.5
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 3.8e-79 299.3 348 50.6
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 6.4e-79 298.5 346 48.6
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 6.4e-79 298.5 352 47.2
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 6.4e-79 298.5 355 49.3
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 8.4e-79 298.1 347 46.1
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 8.4e-79 298.1 290 50.7
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.4e-78 297.4 352 45.5
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 1.9e-78 297.0 349 50.1
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 3.2e-78 296.2 353 45.0
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 4.2e-78 295.8 348 49.7
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 9.3e-78 294.7 349 44.7
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 2.7e-77 293.1 348 49.1
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 2.7e-77 293.1 346 46.8
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 3.5e-77 292.7 400 42.2
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.8e-76 290.4 351 48.1
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 8.7e-76 288.1 282 51.8
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.5e-75 287.3 436 41.1
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 2.5e-75 286.6 348 48.3
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 4.3e-75 285.8 350 46.9
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 8.2e-74 281.6 348 48.3
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 1.1e-73 281.2 345 44.6
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.2e-72 277.7 347 44.1
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 4.5e-72 275.8 347 44.4
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 2.5e-70 270.0 352 43.2
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 5.5e-70 268.9 347 43.8
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 7.1e-70 268.5 375 41.9
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 6.0e-69 265.4 307 46.3
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.5e-67 260.8 350 46.6
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 4.3e-67 259.2 348 46.3
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 9.7e-67 258.1 348 45.7
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 6.3e-66 255.4 350 44.9
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.5e-64 250.8 349 43.6
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 3.8e-63 246.1 271 47.2
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 3.2e-62 243.0 355 40.8
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 1.6e-61 240.7 215 58.1
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 8.8e-60 235.0 224 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 3.7e-58 229.6 219 50.2
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.0e-55 221.5 348 38.5
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.0e-55 221.5 348 38.5
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.7e-53 212.6 197 55.8
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 3.9e-52 209.5 188 53.2
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 8.8e-52 208.4 282 40.8
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 5.2e-44 182.6 206 46.1
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 8.2e-42 175.3 168 47.6
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 1.6e-40 171.0 328 35.4
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 7.7e-40 168.7 371 30.5
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 1.4e-33 147.9 355 30.7
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.3e-31 141.4 276 32.6
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 8.8e-28 128.6 159 48.4
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 9.1e-25 118.6 161 41.0
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 1.3e-23 114.8 122 46.7
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 3.0e-20 103.6 123 41.5
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 1.1e-14 85.1 84 48.8
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 4.3e-14 83.2 76 52.6
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-12 77.8 75 48.0
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.2e-11 75.1 65 56.9
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-11 72.0 140 31.4
Cre06.g278176 Chlamydomonas reinhardtii HOM05D003769 ORTHO05D034408 8.6e-07 58.9 148 29.7
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.1e-06 58.5 80 38.8


User provided reference genes

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