Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 3.7e-146 521.5 265 100.0
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 5.0e-79 298.5 265 55.1
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.2e-77 291.6 265 54.3
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.6e-75 286.2 265 54.0
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 2.6e-67 259.6 269 52.8
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.3e-66 257.3 266 48.5
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.2e-66 256.5 267 49.4
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 8.3e-66 254.6 267 48.7
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 3.2e-65 252.7 270 48.5
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 4.1e-65 252.3 269 48.3
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 9.2e-65 251.1 270 48.1
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 9.2e-65 251.1 266 48.9
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.2e-64 250.8 267 48.3
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.2e-64 250.8 270 48.5
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.6e-64 250.4 267 48.3
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.1e-64 250.0 266 48.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.1e-64 250.0 266 48.9
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.7e-64 249.6 267 46.4
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.6e-64 248.8 270 48.1
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 4.6e-64 248.8 269 49.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.6e-64 248.8 270 48.1
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.0e-64 248.4 268 49.6
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 6.0e-64 248.4 271 48.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.0e-64 248.4 269 48.0
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 7.8e-64 248.1 270 48.1
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 7.8e-64 248.1 267 47.9
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 7.8e-64 248.1 266 48.5
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 7.8e-64 248.1 266 50.0
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 7.8e-64 248.1 270 47.8
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.0e-63 247.7 269 49.8
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.0e-63 247.7 269 48.0
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.0e-63 247.7 267 47.6
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.3e-63 246.5 266 49.2
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.3e-63 246.5 270 46.3
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 5.1e-63 245.4 270 48.1
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 5.1e-63 245.4 266 45.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 5.1e-63 245.4 266 45.9
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 6.6e-63 245.0 266 48.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 6.6e-63 245.0 269 48.0
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 6.6e-63 245.0 269 48.0
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 8.6e-63 244.6 266 48.1
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 8.6e-63 244.6 266 48.5
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.5e-62 243.8 266 46.6
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.5e-62 243.0 266 48.1
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.3e-62 242.3 270 48.1
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.5e-62 241.1 269 47.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 1.6e-61 240.4 269 46.8
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.6e-61 240.4 268 46.3
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.1e-61 240.0 270 46.3
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 3.6e-61 239.2 268 47.8
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 3.6e-61 239.2 269 46.5
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.6e-61 239.2 266 46.2
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 6.2e-61 238.4 268 47.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 6.2e-61 238.4 267 46.1
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 8.1e-61 238.0 270 47.0
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.1e-60 237.7 266 47.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.8e-60 236.9 266 45.9
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.8e-60 236.9 270 47.0
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.8e-60 236.9 270 46.7
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.8e-60 236.9 270 47.4
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.8e-60 236.9 266 46.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.1e-60 236.1 270 45.9
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.8e-60 235.0 266 47.0
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 8.9e-60 234.6 271 43.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 8.9e-60 234.6 269 45.7
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 8.9e-60 234.6 270 45.2
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.2e-59 234.2 269 45.4
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.2e-59 234.2 265 46.4
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.5e-59 233.8 269 46.1
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.5e-59 233.8 270 46.7
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.5e-59 233.8 272 45.2
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.0e-59 233.4 272 43.8
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 2.0e-59 233.4 270 45.9
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 2.0e-59 233.4 265 46.8
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 2.6e-59 233.0 270 44.8
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 3.4e-59 232.6 271 45.0
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 3.4e-59 232.6 265 46.8
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.4e-59 232.3 266 46.6
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.4e-59 232.3 269 45.7
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.4e-59 232.3 269 46.5
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.4e-59 232.3 270 46.3
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.6e-59 231.5 269 45.7
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 7.6e-59 231.5 269 45.4
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.7e-58 230.3 266 45.1
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 2.2e-58 229.9 270 44.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 3.8e-58 229.2 279 45.5
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 3.8e-58 229.2 269 44.6
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 4.9e-58 228.8 265 46.0
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 6.4e-58 228.4 270 46.3
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 6.4e-58 228.4 270 45.2
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 6.4e-58 228.4 266 45.1
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 8.4e-58 228.0 278 47.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 8.4e-58 228.0 266 45.5
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.1e-57 227.6 269 44.6
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.1e-57 227.6 269 45.0
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.1e-57 227.6 270 45.2
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.9e-57 226.9 269 45.0
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 2.4e-57 226.5 269 44.2
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 3.2e-57 226.1 270 44.1
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 4.2e-57 225.7 270 45.9
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 5.4e-57 225.3 269 44.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 7.1e-57 224.9 270 42.6
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.2e-56 224.2 272 45.6
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.6e-56 223.8 270 44.4
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 2.1e-56 223.4 273 42.9
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 4.6e-56 222.2 270 44.4
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 6.0e-56 221.9 270 43.7
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 7.8e-56 221.5 282 46.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 3.0e-55 219.5 271 44.3
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 6.6e-55 218.4 269 42.8
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.9e-54 216.9 273 41.0
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.9e-54 216.9 269 42.8
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 3.3e-54 216.1 271 46.1
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.6e-54 215.3 273 40.7
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.6e-54 215.3 266 44.0
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.4e-52 209.9 271 43.5
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 6.9e-52 208.4 269 42.8
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 5.4e-49 198.7 266 41.7
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.5e-48 196.1 269 41.6
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.0e-43 180.3 265 38.9
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.4e-41 174.1 257 40.9
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.3e-38 162.9 190 46.8
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.1e-29 133.7 139 48.2
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.1e-29 133.7 155 44.5
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 7.4e-22 108.6 123 44.7
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 8.5e-18 95.1 86 50.0
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.1e-16 89.0 111 42.3
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 3.9e-15 86.3 138 40.6
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 6.3e-13 79.0 129 39.5
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.5e-11 74.3 170 30.6
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.9e-09 67.4 54 59.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.9e-09 67.4 53 56.6
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.1e-08 63.9 78 43.6
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.1e-08 63.9 78 43.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 3.6e-08 63.2 82 42.7
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 5.7e-06 55.8 78 35.9


User provided reference genes

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