Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.5e-189 665.2 329 100.0
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.5e-32 144.4 169 55.6
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.8e-18 97.1 173 40.5
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.1e-17 95.1 155 42.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-17 95.1 155 42.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-17 95.1 155 42.6
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.4e-17 94.7 134 47.8
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 3.1e-17 93.6 147 44.9
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.0e-17 93.2 143 46.2
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 8.9e-17 92.0 161 42.9
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 8.9e-17 92.0 155 41.9
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.2e-16 91.7 151 45.7
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.5e-16 91.3 147 44.2
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.0e-16 90.9 155 41.3
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.0e-16 90.9 147 43.5
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.4e-16 90.1 149 44.3
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 4.4e-16 89.7 150 43.3
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.4e-16 89.7 150 43.3
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 4.4e-16 89.7 152 42.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 5.8e-16 89.4 149 46.3
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.8e-16 89.4 152 41.4
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 5.8e-16 89.4 155 43.2
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 9.8e-16 88.6 147 44.9
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 9.8e-16 88.6 149 42.3
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.3e-15 88.2 160 41.2
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.3e-15 88.2 147 42.9
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.2e-15 87.4 150 42.7
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.9e-15 87.0 155 44.5
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.9e-15 87.0 155 44.5
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.9e-15 87.0 155 44.5
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.9e-15 86.3 148 43.2
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 4.9e-15 86.3 144 43.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.4e-15 85.9 152 43.4
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.4e-15 85.9 152 43.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 8.3e-15 85.5 149 42.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 8.3e-15 85.5 142 44.4
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 8.3e-15 85.5 166 40.4
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.1e-14 85.1 147 45.6
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.1e-14 85.1 165 39.4
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.1e-14 85.1 146 46.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.1e-14 85.1 148 42.6
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-14 84.7 158 43.7
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.4e-14 84.7 147 46.3
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.4e-14 84.7 153 43.1
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.4e-14 84.7 178 37.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.4e-14 84.7 142 44.4
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.4e-14 84.7 147 44.9
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.4e-14 84.7 147 44.9
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.4e-14 84.7 147 44.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.4e-14 84.7 146 43.2
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.4e-14 84.7 154 42.9
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.9e-14 84.3 147 44.9
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.4e-14 84.0 154 43.5
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.4e-14 84.0 149 42.3
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.4e-14 84.0 145 44.1
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.4e-14 84.0 166 38.6
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.4e-14 84.0 142 43.7
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 3.2e-14 83.6 165 38.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.2e-14 83.6 142 43.7
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 4.1e-14 83.2 151 45.0
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 4.1e-14 83.2 151 45.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 4.1e-14 83.2 152 43.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 5.4e-14 82.8 179 36.3
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 5.4e-14 82.8 152 44.7
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 5.4e-14 82.8 142 43.0
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 5.4e-14 82.8 144 44.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 5.4e-14 82.8 144 44.4
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 5.4e-14 82.8 145 44.1
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 5.4e-14 82.8 146 43.2
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 7.0e-14 82.4 148 45.3
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 7.0e-14 82.4 158 43.0
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 7.0e-14 82.4 153 40.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.0e-14 82.4 148 42.6
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 7.0e-14 82.4 152 42.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.0e-14 82.4 146 41.1
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 9.2e-14 82.0 151 39.7
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 9.2e-14 82.0 152 41.4
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.2e-13 81.6 152 42.1
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.2e-13 81.6 101 57.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.2e-13 81.6 143 42.7
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.2e-13 81.6 150 40.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.6e-13 81.3 146 41.1
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.6e-13 81.3 151 41.7
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.1e-13 80.9 150 37.3
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.1e-13 80.9 97 57.7
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.7e-13 80.5 131 45.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 2.7e-13 80.5 147 43.5
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.7e-13 80.5 145 36.6
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 2.7e-13 80.5 146 39.7
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.7e-13 80.5 180 38.9
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.7e-13 80.5 147 40.1
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 3.5e-13 80.1 81 61.7
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.5e-13 80.1 147 40.8
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.5e-13 80.1 146 41.1
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.5e-13 80.1 163 37.4
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 4.6e-13 79.7 132 43.2
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 6.0e-13 79.3 147 38.1
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.0e-13 79.3 146 41.1
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 7.8e-13 79.0 84 60.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 7.8e-13 79.0 151 39.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 7.8e-13 79.0 154 42.2
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 7.8e-13 79.0 146 41.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 7.8e-13 79.0 144 40.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 7.8e-13 79.0 149 40.9
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 7.8e-13 79.0 149 40.9
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 7.8e-13 79.0 149 40.9
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.0e-12 78.6 100 55.0
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.3e-12 78.2 97 58.8
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.7e-12 77.8 164 38.4
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.7e-12 77.8 97 56.7
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.7e-12 77.8 100 54.0
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.7e-12 77.8 161 39.1
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.7e-12 77.8 153 39.2
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.3e-12 77.4 97 56.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 2.3e-12 77.4 97 56.7
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.3e-12 77.4 97 56.7
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.3e-12 77.4 97 56.7
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.3e-12 77.4 86 59.3
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.3e-12 77.4 91 54.9
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.3e-12 77.4 91 54.9
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.3e-12 77.4 91 54.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.3e-12 77.4 100 53.0
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.3e-12 77.4 150 42.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.9e-12 76.6 100 54.0
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-11 75.1 179 31.8
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.5e-11 74.7 97 54.6
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.5e-11 74.7 150 40.7
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.5e-11 73.9 84 56.0
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.5e-11 73.9 85 60.0
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 2.5e-11 73.9 85 60.0
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.5e-11 73.9 101 51.5
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 2.1e-10 70.9 75 56.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.1e-10 70.9 89 43.8
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 2.8e-10 70.5 100 51.0
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 3.6e-10 70.1 167 36.5
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.4e-09 68.2 94 58.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 5.2e-09 66.2 108 38.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 8.9e-09 65.5 141 37.6
SMO271G0012 Selaginella moellendorffii HOM05D001236 ORTHO05D001090 1.5e-08 64.7 40 77.5
SMO308G0048 Selaginella moellendorffii HOM05D031165 ORTHO05D378015 1.5e-08 64.7 44 68.2
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.5e-08 64.7 165 35.2
SMO271G0117 Selaginella moellendorffii HOM05D031165 ORTHO05D374369 3.4e-08 63.5 34 85.3
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.3e-07 61.6 75 50.7
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.9e-07 59.7 48 70.8
SMO271G0005 Selaginella moellendorffii HOM05D001236 ORTHO05D001090 4.9e-07 59.7 130 36.2
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 4.9e-07 59.7 93 47.3
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 7.1e-06 55.8 74 52.7


User provided reference genes

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