Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 6.9e-104 380.6 182 100.0
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.1e-76 289.3 212 72.6
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.3e-21 105.9 127 42.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.3e-21 105.5 127 42.5
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.6e-21 104.4 127 42.5
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.3e-20 104.0 127 42.5
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-20 103.6 127 42.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-19 100.9 140 40.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-19 100.5 108 47.2
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.8e-19 100.1 127 41.7
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.4e-19 99.8 140 39.3
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 3.1e-19 99.4 123 43.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 6.9e-19 98.2 108 46.3
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.9e-19 98.2 108 46.3
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 6.9e-19 98.2 116 44.0
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 6.9e-19 98.2 116 44.0
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.2e-18 97.4 124 41.9
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.5e-18 97.1 129 40.3
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.5e-18 97.1 108 46.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.0e-18 96.7 108 46.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 4.5e-18 95.5 108 45.4
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.8e-18 95.1 129 40.3
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 7.6e-18 94.7 108 47.2
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.6e-18 94.7 108 45.4
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 7.6e-18 94.7 124 41.1
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 7.6e-18 94.7 107 44.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.3e-17 94.0 110 45.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.3e-17 94.0 107 43.0
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.3e-17 94.0 124 41.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.7e-17 93.6 107 44.9
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.2e-17 93.2 124 41.9
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.2e-17 93.2 122 43.4
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 2.2e-17 93.2 124 40.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 2.9e-17 92.8 104 44.2
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.9e-17 92.8 107 43.9
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.8e-17 92.4 122 41.0
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.9e-17 92.0 107 43.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 6.4e-17 91.7 110 42.7
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 6.4e-17 91.7 124 41.9
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 6.4e-17 91.7 122 41.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 8.4e-17 91.3 124 39.5
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 8.4e-17 91.3 124 39.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 8.4e-17 91.3 123 40.7
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 8.4e-17 91.3 123 41.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 8.4e-17 91.3 99 44.4
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.4e-17 91.3 124 40.3
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.1e-16 90.9 112 42.0
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.1e-16 90.9 123 42.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.1e-16 90.9 124 39.5
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.4e-16 90.5 121 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.4e-16 90.5 134 38.1
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.4e-16 90.5 122 43.4
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.4e-16 90.5 109 44.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.9e-16 90.1 104 42.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.9e-16 90.1 115 41.7
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.9e-16 90.1 124 39.5
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 2.4e-16 89.7 130 38.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.4e-16 89.7 122 41.8
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.2e-16 89.4 107 40.2
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.2e-16 89.4 126 41.3
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.2e-16 89.4 122 42.6
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.2e-16 89.4 122 42.6
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.2e-16 89.4 108 42.6
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.2e-16 89.4 124 39.5
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.2e-16 89.0 134 38.1
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 4.2e-16 89.0 106 43.4
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 4.2e-16 89.0 124 40.3
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.2e-16 89.0 130 40.0
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.4e-16 88.6 107 39.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 5.4e-16 88.6 106 43.4
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 5.4e-16 88.6 124 39.5
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 7.1e-16 88.2 124 40.3
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 7.1e-16 88.2 107 39.3
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 7.1e-16 88.2 121 40.5
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 7.1e-16 88.2 123 41.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 7.1e-16 88.2 124 41.9
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 7.1e-16 88.2 123 41.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 9.3e-16 87.8 106 41.5
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 9.3e-16 87.8 122 41.8
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 9.3e-16 87.8 122 41.8
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 9.3e-16 87.8 107 40.2
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 9.3e-16 87.8 124 38.7
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.2e-15 87.4 124 41.9
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.6e-15 87.0 104 41.3
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.6e-15 87.0 115 43.5
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.1e-15 86.7 82 48.8
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.1e-15 86.7 107 39.3
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 2.1e-15 86.7 85 47.1
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 2.7e-15 86.3 82 48.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.7e-15 86.3 86 46.5
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.7e-15 86.3 124 37.9
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.7e-15 86.3 107 42.1
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.7e-15 86.3 124 36.3
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 3.5e-15 85.9 115 40.0
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 3.5e-15 85.9 115 39.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 3.5e-15 85.9 115 39.1
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.5e-15 85.9 115 40.0
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 3.5e-15 85.9 84 50.0
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 4.6e-15 85.5 115 39.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 4.6e-15 85.5 106 40.6
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.6e-15 85.5 106 40.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.6e-15 85.5 115 39.1
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.6e-15 85.5 116 39.7
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.6e-15 85.5 107 38.3
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.6e-15 85.5 107 38.3
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 4.6e-15 85.5 71 56.3
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 4.6e-15 85.5 107 39.3
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 6.0e-15 85.1 115 39.1
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 6.0e-15 85.1 106 39.6
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 7.9e-15 84.7 115 38.3
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.9e-15 84.7 115 39.1
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 7.9e-15 84.7 85 44.7
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 7.9e-15 84.7 84 48.8
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.9e-15 84.7 69 59.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 7.9e-15 84.7 108 40.7
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.3e-14 84.0 86 45.3
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.3e-14 84.0 107 37.4
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 2.3e-14 83.2 82 46.3
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.0e-14 82.8 125 38.4
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.9e-14 82.4 106 39.6
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.1e-14 82.0 124 39.5
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 6.7e-14 81.6 85 50.6
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 8.7e-14 81.3 104 39.4
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.7e-14 81.3 89 46.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 8.7e-14 81.3 122 37.7
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.1e-13 80.9 87 46.0
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.1e-13 80.9 87 46.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.9e-13 80.1 107 39.3
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.9e-13 80.1 117 38.5
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 4.3e-13 79.0 123 37.4
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 7.4e-13 78.2 82 46.3
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 7.4e-13 78.2 115 36.5
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.3e-12 77.4 86 43.0
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.1e-12 76.6 86 40.7
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 2.1e-12 76.6 85 43.5
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.8e-12 76.3 77 51.9
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 2.8e-12 76.3 86 41.9
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 3.6e-12 75.9 86 40.7
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.1e-11 74.3 129 34.1
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.1e-11 72.8 82 41.5
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.2e-10 70.9 68 48.5
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 3.4e-10 69.3 124 40.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.5e-10 68.9 80 42.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 6.4e-09 65.1 47 55.3
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 7.9e-07 58.2 66 39.4
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 6.7e-06 55.1 123 30.1


User provided reference genes

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