Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO308G0007 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 7.0e-87 323.9 165 100.0
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 7.3e-36 154.5 163 55.8
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 3.6e-35 152.1 166 52.4
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 2.0e-33 146.4 163 52.8
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.4e-33 145.6 163 52.8
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 5.8e-33 144.8 165 52.7
SEGI_29841 Sequoiadendron giganteum HOM05D002889 ORTHO05D003366 2.2e-32 142.9 166 51.2
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 8.4e-32 141.0 166 53.6
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 2.4e-31 139.4 166 52.4
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 3.2e-31 139.0 165 51.5
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 4.2e-31 138.7 171 49.7
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 5.4e-31 138.3 171 49.7
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 5.4e-31 138.3 166 52.4
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 9.3e-31 137.5 166 51.8
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 1.2e-30 137.1 166 51.2
GSVIVG01028491001 Vitis vinifera HOM05D002889 ORTHO05D003366 1.2e-30 137.1 162 51.2
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 1.6e-30 136.7 171 50.3
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 1.6e-30 136.7 166 52.4
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 1.6e-30 136.7 166 52.4
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 1.6e-30 136.7 165 51.5
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 2.1e-30 136.3 166 50.0
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 2.1e-30 136.3 162 51.2
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 2.7e-30 136.0 166 50.0
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 2.7e-30 136.0 162 50.6
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 2.7e-30 136.0 165 51.5
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 2.7e-30 136.0 166 51.8
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 2.7e-30 136.0 163 51.5
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 2.7e-30 136.0 170 48.8
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 3.5e-30 135.6 171 49.7
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 3.5e-30 135.6 171 49.7
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 3.5e-30 135.6 162 51.2
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 3.5e-30 135.6 165 50.9
vmacro14774 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 3.5e-30 135.6 162 50.0
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 4.6e-30 135.2 165 50.9
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 6.0e-30 134.8 167 49.7
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 6.0e-30 134.8 167 49.7
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 6.0e-30 134.8 166 50.6
Actinidia37570 Actinidia chinensis HOM05D002889 ORTHO05D003366 7.8e-30 134.4 166 50.0
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 7.8e-30 134.4 167 48.5
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 7.8e-30 134.4 171 49.1
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 7.8e-30 134.4 165 50.9
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 7.8e-30 134.4 163 52.8
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 7.8e-30 134.4 175 49.7
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 7.8e-30 134.4 171 49.1
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.0e-29 134.0 166 50.6
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 1.0e-29 134.0 162 52.5
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.0e-29 134.0 162 52.5
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.3e-29 133.7 162 51.2
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 1.3e-29 133.7 166 50.0
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 1.3e-29 133.7 166 50.6
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 1.3e-29 133.7 166 49.4
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.3e-29 133.7 166 53.0
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 1.3e-29 133.7 163 51.5
TAR636G2078 Trochodendron aralioides HOM05D002889 ORTHO05D003366 1.3e-29 133.7 165 50.3
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 1.7e-29 133.3 167 47.9
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 1.7e-29 133.3 167 47.9
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 1.7e-29 133.3 167 48.5
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 1.7e-29 133.3 166 51.2
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.7e-29 133.3 162 51.2
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 2.3e-29 132.9 166 50.6
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.3e-29 132.9 162 51.9
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 2.3e-29 132.9 165 49.1
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 2.3e-29 132.9 165 49.7
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 2.3e-29 132.9 162 51.9
CAN.G503.27 Capsicum annuum HOM05D002889 ORTHO05D003366 3.0e-29 132.5 166 51.2
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 3.0e-29 132.5 162 51.9
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 3.9e-29 132.1 162 48.8
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 3.9e-29 132.1 162 50.6
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 3.9e-29 132.1 165 50.3
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 5.1e-29 131.7 148 52.7
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 5.1e-29 131.7 166 50.0
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.1e-29 131.7 162 50.6
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 5.1e-29 131.7 163 47.9
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 5.1e-29 131.7 165 49.1
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 5.1e-29 131.7 165 49.1
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 6.6e-29 131.3 162 50.0
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 6.6e-29 131.3 170 47.6
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 6.6e-29 131.3 167 47.3
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 6.6e-29 131.3 166 50.0
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 6.6e-29 131.3 166 49.4
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 6.6e-29 131.3 165 50.3
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 8.7e-29 131.0 166 49.4
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 8.7e-29 131.0 162 50.0
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 8.7e-29 131.0 162 50.0
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 8.7e-29 131.0 162 50.0
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 8.7e-29 131.0 162 50.0
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 8.7e-29 131.0 162 50.6
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 1.1e-28 130.6 162 50.0
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 1.5e-28 130.2 166 49.4
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.5e-28 130.2 163 50.3
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.5e-28 130.2 162 51.2
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 1.5e-28 130.2 162 50.0
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 1.5e-28 130.2 163 47.2
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 1.5e-28 130.2 167 47.9
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 1.5e-28 130.2 165 49.1
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 1.9e-28 129.8 165 48.5
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 1.9e-28 129.8 167 48.5
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.9e-28 129.8 162 50.6
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.9e-28 129.8 162 50.0
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 1.9e-28 129.8 169 49.1
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.9e-28 129.8 162 49.4
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 2.5e-28 129.4 187 47.6
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 3.3e-28 129.0 162 50.0
CDE09G0867 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 4.3e-28 128.6 167 49.1
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 4.3e-28 128.6 167 47.9
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 4.3e-28 128.6 160 50.6
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 4.3e-28 128.6 163 47.9
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 4.3e-28 128.6 166 48.8
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 4.3e-28 128.6 169 48.5
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 5.6e-28 128.3 162 48.8
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 5.6e-28 128.3 166 48.2
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 5.6e-28 128.3 166 49.4
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 7.3e-28 127.9 166 48.8
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 7.3e-28 127.9 162 51.2
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 9.6e-28 127.5 166 48.2
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 1.3e-27 127.1 163 48.5
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.3e-27 127.1 162 48.1
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 1.6e-27 126.7 165 48.5
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 1.6e-27 126.7 166 48.8
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.6e-27 126.7 166 49.4
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 2.1e-27 126.3 165 48.5
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 2.1e-27 126.3 166 48.8
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 3.6e-27 125.6 165 47.9
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 3.6e-27 125.6 166 47.6
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 3.6e-27 125.6 166 48.8
Pp3c3_31820 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.6e-27 125.6 164 47.0
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 3.6e-27 125.6 167 48.5
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 4.8e-27 125.2 165 47.9
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 4.8e-27 125.2 165 47.9
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 4.8e-27 125.2 165 47.9
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 6.2e-27 124.8 165 48.5
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 6.2e-27 124.8 165 47.9
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 6.2e-27 124.8 162 49.4
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 1.1e-26 124.0 166 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3270 Anthoceros agrestis HOM05D002889 ORTHO05D003366 1.4e-26 123.6 148 45.9
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 1.4e-26 123.6 164 48.2
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.4e-26 123.6 166 47.0
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 1.4e-26 123.6 163 49.7
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 1.4e-26 123.6 163 49.7
HPP92_027293 Vanilla planifolia HOM05D002889 ORTHO05D003366 1.4e-26 123.6 156 47.4
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 2.4e-26 122.9 166 47.0
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 3.1e-26 122.5 166 47.6
Glyma.19G060900 Glycine max HOM05D002889 ORTHO05D003366 1.2e-25 120.6 161 46.6
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 1.2e-25 120.6 197 44.2
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 2.0e-25 119.8 149 49.0
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 2.6e-25 119.4 167 45.5
Os02g0617300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 3.4e-25 119.0 167 44.9
Os04g0507500 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 5.8e-25 118.2 168 44.6
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 7.6e-25 117.9 167 44.3
CDE02G3724 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 1.7e-24 116.7 166 44.6
SHI47266 Sapria himalayana HOM05D002889 ORTHO05D003366 2.2e-24 116.3 166 42.8
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 1.1e-23 114.0 173 43.9
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 1.9e-23 113.2 165 46.7
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 4.2e-23 112.1 173 43.4
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 2.5e-20 102.8 154 42.9
SMO235G0068 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 1.5e-17 93.6 176 33.0
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 2.4e-15 86.3 164 36.6
Zm00001eb116890 Zea mays HOM05D002889 ORTHO05D003366 3.0e-13 79.3 118 42.4
Oeu039639.1 Olea europaea HOM05D002889 ORTHO05D003366 6.7e-13 78.2 63 69.8
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.1e-12 77.4 164 35.4
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 1.5e-12 77.0 164 33.5
SGA_v2.0_scaffold88G27298 Striga asiatica HOM05D002889 ORTHO05D028411 1.9e-12 76.6 57 63.2
FAN09G3985 Fragaria x ananassa HOM05D002889 ORTHO05D003366 7.4e-12 74.7 63 65.1
FAN21G2147 Fragaria x ananassa HOM05D002889 ORTHO05D003366 7.4e-12 74.7 63 65.1
SGA_v2.0_scaffold22G09805 Striga asiatica HOM05D002889 ORTHO05D028411 2.8e-11 72.8 66 57.6
Hma1.2p1_1018F.1_g248420 Hydrangea macrophylla HOM05D002889 ORTHO05D003366 1.4e-10 70.5 63 63.5
vmacro14019 Vaccinium macrocarpon HOM05D002889 ORTHO05D028411 1.7e-08 63.5 52 55.8
DCAR_015416 Daucus carota HOM05D002889 ORTHO05D045050 3.2e-07 59.3 62 54.8


User provided reference genes

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