Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.0e-111 405.2 206 100.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.9e-110 402.5 206 99.5
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.1e-77 292.7 204 69.6
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 2.8e-77 292.4 203 68.0
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 4.8e-77 291.6 203 69.0
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 6.3e-77 291.2 203 70.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.1e-76 290.4 203 68.0
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.1e-76 288.9 203 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 5.3e-76 288.1 206 68.4
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 5.3e-76 288.1 203 69.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 6.9e-76 287.7 203 68.5
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.2e-75 287.0 203 69.5
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.5e-75 286.6 203 69.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.0e-75 286.2 203 69.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 3.4e-75 285.4 203 69.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 4.5e-75 285.0 203 69.0
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.0e-74 283.9 203 67.5
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.0e-74 283.9 203 68.0
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.0e-74 283.9 203 68.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.3e-74 283.5 203 68.5
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.7e-74 283.1 203 68.5
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 3.8e-74 282.0 203 67.5
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 5.0e-74 281.6 203 66.0
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 5.0e-74 281.6 203 67.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 5.0e-74 281.6 203 66.5
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 5.0e-74 281.6 203 67.5
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 5.0e-74 281.6 205 68.3
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.0e-74 281.6 203 66.5
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 6.5e-74 281.2 203 66.5
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 6.5e-74 281.2 203 68.5
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 8.5e-74 280.8 203 67.0
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 8.5e-74 280.8 203 68.0
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 8.5e-74 280.8 203 68.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.5e-74 280.8 203 67.5
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 67.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.4e-73 280.0 203 68.0
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.4e-73 280.0 203 67.5
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.4e-73 280.0 203 67.5
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.4e-73 280.0 203 64.0
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.9e-73 279.6 203 67.5
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.9e-73 279.6 206 67.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.9e-73 279.6 203 67.5
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.9e-73 279.6 203 66.5
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 3.2e-73 278.9 203 67.0
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 3.2e-73 278.9 203 67.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 3.2e-73 278.9 203 66.5
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 3.2e-73 278.9 203 67.0
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 3.2e-73 278.9 203 67.0
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.2e-73 278.5 203 66.0
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.2e-73 278.5 202 67.3
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 4.2e-73 278.5 203 67.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 4.2e-73 278.5 203 67.0
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 4.2e-73 278.5 203 65.5
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 5.5e-73 278.1 203 67.5
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 9.3e-73 277.3 203 66.0
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 9.3e-73 277.3 203 66.0
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.2e-72 276.9 203 66.5
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.2e-72 276.9 203 66.0
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.2e-72 276.9 203 67.0
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.6e-72 276.6 203 67.0
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.6e-72 276.6 203 67.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 2.1e-72 276.2 203 66.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.1e-72 276.2 203 67.0
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 2.7e-72 275.8 203 66.0
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.7e-72 275.8 203 66.0
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.7e-72 275.8 203 66.5
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.7e-72 275.8 202 66.8
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.7e-72 275.8 203 67.0
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.6e-72 275.4 203 66.5
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 3.6e-72 275.4 208 65.9
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 6.1e-72 274.6 203 64.5
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 6.1e-72 274.6 208 64.9
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.8e-71 273.1 203 65.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.3e-71 272.7 224 62.1
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 3.0e-71 272.3 203 65.5
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 3.9e-71 271.9 203 64.0
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 5.1e-71 271.6 203 64.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 6.7e-71 271.2 204 65.7
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.1e-70 270.4 202 64.9
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.9e-70 269.6 203 64.5
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 3.3e-70 268.9 203 65.0
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 4.3e-70 268.5 203 63.5
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 7.4e-70 267.7 203 63.5
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 7.4e-70 267.7 203 63.5
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 7.4e-70 267.7 203 63.5
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.2e-69 266.2 203 63.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 3.7e-69 265.4 203 65.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 6.3e-69 264.6 206 65.0
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 6.3e-69 264.6 203 64.5
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.4e-68 263.5 213 59.6
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.4e-68 262.7 203 63.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.1e-68 261.9 203 62.1
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 2.0e-67 259.6 184 64.7
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 7.7e-67 257.7 213 59.6
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 4.2e-65 251.9 204 62.3
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.6e-64 248.8 203 61.6
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 3.9e-63 245.4 203 62.6
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 1.1e-62 243.8 203 61.1
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 2.2e-61 239.6 178 67.4
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 6.9e-60 234.6 167 67.7
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 5.9e-59 231.5 203 59.6
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.2e-57 225.7 164 65.2
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.0e-55 220.7 164 64.6
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.0e-55 219.2 184 60.3
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.7e-53 213.4 173 64.2
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.4e-52 210.3 157 63.1
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 3.1e-52 209.1 247 47.8
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 2.2e-50 203.0 213 46.9
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.5e-49 200.3 156 62.2
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 4.7e-48 195.3 156 59.6
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.0e-46 189.9 186 53.8
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.3e-45 187.2 208 48.1
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 2.4e-44 183.0 131 67.9
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.7e-43 179.5 208 49.0
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 8.8e-39 164.5 121 64.5
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 8.8e-39 164.5 121 64.5
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.6e-35 153.7 142 57.7
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 5.9e-35 151.8 151 53.6
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-34 149.4 223 40.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.9e-34 149.4 223 40.8
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 4.5e-27 125.6 95 65.3
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.8e-23 113.6 194 36.1
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 8.6e-18 94.7 64 67.2
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.1e-15 87.8 84 54.8
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.4e-13 78.6 52 69.2
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.4e-13 78.6 51 70.6
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 4.1e-12 75.9 53 69.8
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 5.4e-12 75.5 64 57.8
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 2.0e-11 73.6 73 52.1
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-11 73.6 96 42.7
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.3e-10 70.1 57 59.6
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 2.8e-08 63.2 37 75.7
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 4.7e-08 62.4 54 55.6


User provided reference genes

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