Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 0.0e+00 2036.5 1054 100.0
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 0.0e+00 1148.7 1069 58.3
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 0.0e+00 1146.0 1099 57.4
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 0.0e+00 1130.9 1224 52.7
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 0.0e+00 1108.6 975 60.0
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 0.0e+00 1099.0 1054 56.1
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 4.9e-218 762.3 829 50.1
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 2.9e-202 709.9 1100 40.4
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 7.0e-124 449.5 816 33.3
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 1.1e-121 442.2 739 34.1
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 1.5e-121 441.8 775 33.7
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 2.5e-121 441.0 734 33.8
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 2.5e-121 441.0 796 33.2
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 5.6e-121 439.9 778 34.3
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 7.3e-121 439.5 779 33.8
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 7.3e-121 439.5 778 33.5
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 9.5e-121 439.1 735 34.0
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 2.1e-120 438.0 779 33.6
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 2.8e-120 437.6 776 33.4
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 3.6e-120 437.2 778 33.3
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 3.6e-120 437.2 778 33.4
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 4.7e-120 436.8 777 33.6
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 6.2e-120 436.4 732 34.4
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 6.2e-120 436.4 778 32.9
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 33.4
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 33.4
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 33.4
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 33.4
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 33.4
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 33.2
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 1.1e-119 435.6 737 34.3
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 1.1e-119 435.6 779 33.5
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 1.8e-119 434.9 736 34.1
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 1.8e-119 434.9 737 33.2
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 1.8e-119 434.9 727 33.4
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.8e-119 434.9 775 32.9
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.8e-119 434.9 775 32.9
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.8e-119 434.9 775 32.9
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.3e-119 434.5 773 33.9
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 2.3e-119 434.5 755 32.6
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 3.1e-119 434.1 731 34.5
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.1e-119 434.1 731 34.5
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 3.1e-119 434.1 737 33.5
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 5.2e-119 433.3 775 32.8
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 5.2e-119 433.3 734 33.9
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 6.8e-119 433.0 736 33.7
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 6.8e-119 433.0 737 33.2
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 8.9e-119 432.6 732 34.2
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 8.9e-119 432.6 736 33.6
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.2e-118 432.2 773 33.8
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 1.2e-118 432.2 770 32.6
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 1.5e-118 431.8 734 33.9
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 1.5e-118 431.8 783 33.0
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.5e-118 431.8 756 33.2
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.5e-118 431.8 756 33.2
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 2.0e-118 431.4 772 33.3
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 2.0e-118 431.4 775 32.6
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 2.6e-118 431.0 731 34.1
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 2.6e-118 431.0 736 34.1
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 2.6e-118 431.0 770 32.6
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 4.4e-118 430.3 751 33.6
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 4.4e-118 430.3 734 33.7
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 4.4e-118 430.3 774 32.8
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 5.8e-118 429.9 735 33.9
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 5.8e-118 429.9 773 32.7
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 7.5e-118 429.5 737 33.2
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 7.5e-118 429.5 737 33.2
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 7.5e-118 429.5 737 32.8
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 7.5e-118 429.5 737 33.0
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 7.5e-118 429.5 737 33.0
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 7.5e-118 429.5 737 32.8
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 9.8e-118 429.1 735 33.9
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 9.8e-118 429.1 735 33.7
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 9.8e-118 429.1 782 33.1
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 9.8e-118 429.1 774 32.8
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 9.8e-118 429.1 774 32.8
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.3e-117 428.7 736 33.3
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 1.3e-117 428.7 813 32.5
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 1.3e-117 428.7 736 33.4
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 1.3e-117 428.7 737 32.8
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 1.7e-117 428.3 736 33.7
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 1.7e-117 428.3 737 32.7
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 1.7e-117 428.3 745 33.8
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 2.9e-117 427.6 737 32.7
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 3.7e-117 427.2 733 34.0
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 3.7e-117 427.2 742 34.1
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 3.7e-117 427.2 752 33.9
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 3.7e-117 427.2 731 34.2
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 4.9e-117 426.8 737 32.7
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 6.4e-117 426.4 768 31.9
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 8.3e-117 426.0 775 33.4
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 8.3e-117 426.0 771 32.6
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 8.3e-117 426.0 725 33.7
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 1.1e-116 425.6 737 32.8
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 1.4e-116 425.2 735 33.9
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 1.9e-116 424.9 739 34.0
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 1.9e-116 424.9 779 33.5
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.9e-116 424.9 737 33.0
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 2.4e-116 424.5 780 32.9
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 2.4e-116 424.5 790 32.7
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 3.2e-116 424.1 737 32.7
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 3.2e-116 424.1 733 34.0
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 9.2e-116 422.5 779 32.0
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 1.6e-115 421.8 734 33.2
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.1e-115 421.4 779 32.2
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 2.7e-115 421.0 737 32.7
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 4.6e-115 420.2 737 33.4
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 4.6e-115 420.2 736 33.2
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 6.0e-115 419.9 733 33.2
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.3e-114 417.9 742 32.9
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 3.0e-114 417.5 807 32.3
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 3.9e-114 417.2 786 32.1
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 1.5e-113 415.2 781 33.4
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 4.3e-113 413.7 722 33.5
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.2e-112 412.1 773 32.3
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 2.1e-112 411.4 805 31.8
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 6.2e-112 409.8 771 31.6
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.8e-111 408.3 782 31.8
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 7.5e-110 402.9 781 32.3
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 2.2e-109 401.4 790 30.8
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 2.4e-108 397.9 819 30.3
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 4.6e-107 393.7 768 31.0
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 1.7e-106 391.7 871 31.5
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 1.7e-106 391.7 866 29.7
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 3.9e-106 390.6 712 33.3
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 6.6e-106 389.8 779 31.8
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 1.1e-105 389.0 787 31.8
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 1.2e-104 385.6 884 29.3
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 3.1e-103 380.9 775 31.6
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 4.0e-103 380.6 805 30.8
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 8.9e-103 379.4 755 31.0
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 2.6e-102 377.9 711 31.8
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.4e-100 371.3 668 32.9
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 1.9e-97 361.7 781 30.5
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 2.6e-94 351.3 914 28.0
Sc24g0001490 Simmondsia chinensis HOM05D003675 ORTHO05D004318 4.9e-93 347.1 626 32.3
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 9.3e-92 342.8 735 29.9
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 2.3e-90 338.2 990 26.4
arahy.Tifrunner.gnm1.ann1.119T42 Arachis hypogaea HOM05D003675 ORTHO05D004318 4.8e-88 330.5 533 34.3
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 6.4e-85 320.1 508 35.4
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.6e-83 315.5 751 29.6
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 2.5e-81 308.1 497 35.6
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 5.3e-79 300.4 966 24.5
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 3.8e-77 294.3 528 32.6
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 8.4e-77 293.1 492 36.0
SEGI_15305 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 1.9e-76 292.0 557 30.3
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 5.5e-76 290.4 452 37.2
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 1.0e-74 286.2 728 28.3
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 4.3e-73 280.8 510 34.5
SHI20675 Sapria himalayana HOM05D003675 ORTHO05D000023 4.6e-67 260.8 458 33.0
Haze_27044 Corylus avellana HOM05D003675 ORTHO05D004318 1.1e-65 256.1 470 33.0
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 9.0e-63 246.5 727 26.8
CBR_g27771 Chara braunii HOM05D003675 ORTHO05D004318 4.5e-54 217.6 378 32.5
Lj2A328G59 Lonicera japonica HOM05D003675 ORTHO05D004318 5.1e-50 204.1 574 23.7
Haze_05889 Corylus avellana HOM05D003675 ORTHO05D004318 7.0e-47 193.7 286 36.7
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.6e-43 182.6 774 23.5
Nitab4.5_0005814g0040 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.0e-42 179.9 532 25.8
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 2.6e-38 165.2 338 32.2
RcHm_v2.0_Chr5g0015811 Rosa chinensis HOM05D003675 ORTHO05D004318 2.6e-38 165.2 259 34.7
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.0e-37 163.3 294 33.7
FAN25G0162 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.2e-36 158.3 333 28.5
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.2e-35 156.4 488 26.8
Gohir.D02G239100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.4e-34 152.9 291 28.5
CDE04G1522 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 8.8e-34 150.2 328 27.1
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 5.7e-33 147.5 333 27.3
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 1.7e-32 146.0 227 37.4
HPP92_010709 Vanilla planifolia HOM05D003675 ORTHO05D004318 5.0e-29 134.4 383 28.5
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.1e-28 133.3 218 34.9
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 6.1e-27 127.5 254 30.3
Haze_05681 Corylus avellana HOM05D003675 ORTHO05D004318 1.7e-24 119.4 179 39.7
PGSC0003DMG400003173 Solanum tuberosum HOM05D003675 ORTHO05D004318 2.8e-24 118.6 234 28.2
HPP92_010708 Vanilla planifolia HOM05D003675 ORTHO05D004318 3.7e-24 118.2 240 27.5
arahy.Tifrunner.gnm1.ann1.DS3C7B Arachis hypogaea HOM05D003675 ORTHO05D004318 4.5e-22 111.3 232 28.0
Haze_12671 Corylus avellana HOM05D003675 ORTHO05D004318 1.6e-19 102.8 159 39.0
Haze_12675 Corylus avellana HOM05D003675 ORTHO05D004318 1.6e-19 102.8 159 39.0
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-19 102.4 184 28.3
BcaB03g13829 Brassica carinata HOM05D003675 ORTHO05D004318 2.3e-18 99.0 146 32.9
TAR626G0983 Trochodendron aralioides HOM05D003675 ORTHO05D004318 2.2e-16 92.4 132 33.3
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 4.9e-16 91.3 222 29.3
Lj2A328G58 Lonicera japonica HOM05D003675 ORTHO05D004318 8.3e-16 90.5 114 41.2
MBI18_g34277_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 1.4e-15 89.7 210 27.6
SEGI_02924 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 2.4e-15 89.0 98 42.9
PSO339G2334 Papaver somniferum HOM05D003675 ORTHO05D004318 9.2e-15 87.0 103 40.8
SHI20673 Sapria himalayana HOM05D003675 ORTHO05D004318 1.2e-06 60.1 112 33.0
Haze_18108 Corylus avellana HOM05D001121 ORTHO05D001256 1.6e-06 59.7 170 26.5


User provided reference genes

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