Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 0.0e+00 2717.6 1375 100.0
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 0.0e+00 1108.6 547 97.6
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 8.4e-295 1017.7 520 95.2
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.0e-287 991.9 504 95.2
SMO361G0001 Selaginella moellendorffii HOM05D013654 ORTHO05D377523 7.4e-267 924.9 539 90.0
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 6.3e-266 921.8 552 81.5
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.8e-245 853.2 525 83.4
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 6.6e-231 805.4 554 73.5
SMO105G0002 Selaginella moellendorffii HOM05D013654 ORTHO05D374895 2.7e-224 783.5 539 79.2
SMO145G0121 Selaginella moellendorffii HOM05D013654 ORTHO05D378464 1.8e-132 478.4 493 58.4
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 2.5e-129 468.0 589 43.0
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 7.3e-129 466.5 590 44.6
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 1.6e-128 465.3 583 42.7
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 1.4e-127 462.2 579 44.7
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 6.8e-127 459.9 579 45.3
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.5e-126 458.8 579 43.7
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 1.1e-124 452.6 583 42.9
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.4e-124 452.2 590 43.7
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 1.4e-124 452.2 584 42.0
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 1.8e-124 451.8 586 43.3
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 2.4e-124 451.4 591 42.5
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 7.0e-124 449.9 588 42.2
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 1.2e-123 449.1 583 42.0
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 3.5e-123 447.6 594 42.9
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 7.8e-123 446.4 587 42.9
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 7.8e-123 446.4 587 42.9
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 1.0e-122 446.0 604 41.2
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 5.0e-122 443.7 603 41.0
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 8.6e-122 443.0 584 41.1
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 1.1e-121 442.6 590 42.2
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 1.1e-121 442.6 599 42.4
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 1.1e-121 442.6 618 40.1
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 1.9e-121 441.8 593 42.0
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 2.5e-121 441.4 587 42.4
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 7.3e-121 439.9 587 42.2
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 9.5e-121 439.5 618 39.8
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 2.1e-120 438.3 593 41.0
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 4.7e-120 437.2 588 42.7
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 6.2e-120 436.8 596 40.4
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 8.0e-120 436.4 589 42.3
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 8.0e-120 436.4 593 41.8
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 1.0e-119 436.0 588 42.9
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 1.0e-119 436.0 593 42.2
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 1.0e-119 436.0 579 42.0
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 1.8e-119 435.3 587 43.3
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 2.3e-119 434.9 591 41.6
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 6.8e-119 433.3 593 42.0
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 2.0e-118 431.8 583 41.0
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 3.4e-118 431.0 589 40.7
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 5.8e-118 430.3 593 41.3
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 7.5e-118 429.9 584 41.4
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 9.8e-118 429.5 603 41.0
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 1.7e-117 428.7 596 41.3
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 2.2e-117 428.3 592 40.9
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.2e-117 428.3 590 40.8
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 4.9e-117 427.2 584 42.1
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.1e-116 426.0 578 41.5
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 1.4e-116 425.6 596 40.1
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.9e-116 425.2 598 40.0
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 3.2e-116 424.5 593 40.6
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 7.0e-116 423.3 580 41.4
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 1.2e-115 422.5 607 39.0
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 1.6e-115 422.2 597 40.5
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 1.6e-115 422.2 584 40.2
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 2.0e-115 421.8 578 41.3
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 2.7e-115 421.4 578 40.8
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 2.7e-115 421.4 584 41.1
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 6.0e-115 420.2 593 40.6
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 7.8e-115 419.9 584 41.4
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 7.8e-115 419.9 594 41.1
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.0e-114 419.5 588 40.3
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 3.9e-114 417.5 609 38.3
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 1.1e-113 416.0 593 39.3
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 1.1e-113 416.0 586 41.0
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 1.1e-113 416.0 609 40.6
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 1.9e-113 415.2 590 39.8
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 2.5e-113 414.8 501 45.5
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 4.3e-113 414.1 595 39.5
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 9.5e-113 412.9 590 39.7
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 1.2e-112 412.5 588 39.1
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 1.6e-112 412.1 654 38.5
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.6e-112 412.1 545 40.7
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 3.6e-112 411.0 655 38.6
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 8.1e-112 409.8 592 38.5
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 1.1e-111 409.5 597 40.5
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 4.0e-111 407.5 588 39.1
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 4.0e-111 407.5 667 37.6
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 4.0e-111 407.5 597 39.2
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 4.4e-110 404.1 587 38.2
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 5.8e-110 403.7 591 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 2.2e-109 401.7 634 38.3
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 1.1e-108 399.4 507 44.4
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 1.4e-108 399.1 605 38.0
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 7.1e-108 396.7 530 41.3
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.2e-107 396.0 592 38.0
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 1.2e-107 396.0 530 41.3
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 5.1e-106 390.6 680 35.7
SMO197G0089 Selaginella moellendorffii HOM05D013654 ORTHO05D374640 6.2e-104 383.6 226 92.9
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 6.8e-103 380.2 577 38.1
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 1.5e-102 379.0 587 38.7
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 1.1e-97 362.8 609 37.1
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 4.7e-96 357.5 567 38.4
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 8.9e-95 353.2 584 37.2
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 2.2e-93 348.6 546 38.3
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 7.1e-92 343.6 506 37.7
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 1.9e-89 335.5 590 35.8
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.7e-85 322.4 411 43.8
SMO239G0120 Selaginella moellendorffii HOM05D013654 ORTHO05D376939 2.2e-85 322.0 526 45.1
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 8.7e-82 310.1 575 36.3
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 5.6e-81 307.4 473 37.2
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.4e-76 292.0 390 42.8
SMO166G0011 Selaginella moellendorffii HOM05D013654 ORTHO05D375480 9.3e-76 290.0 361 51.8
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 3.0e-74 285.0 356 45.5
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 2.8e-72 278.5 370 43.5
SMO115G0007 Selaginella moellendorffii HOM05D013654 ORTHO05D373882 4.3e-65 254.6 284 54.9
SMO306G0045 Selaginella moellendorffii HOM05D013654 ORTHO05D378416 5.3e-63 247.7 174 73.0
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 1.1e-55 223.4 260 46.5
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 3.1e-55 221.9 478 33.1
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 3.8e-53 214.9 431 31.8
SMO300G0009 Selaginella moellendorffii HOM05D013654 ORTHO05D379229 1.2e-51 209.9 151 78.1
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.5e-49 203.0 250 47.2
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 3.1e-39 168.7 210 39.5
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 6.5e-37 161.0 183 44.3
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 6.3e-32 144.4 212 35.4
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 1.8e-31 142.9 290 33.8
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 2.5e-28 132.5 438 24.7
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 3.7e-24 118.6 149 40.3
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 1.7e-21 109.8 557 23.2
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 5.2e-18 98.2 362 22.4
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 7.5e-17 94.4 288 30.6
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 1.7e-16 93.2 87 57.5
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 1.7e-16 93.2 87 57.5
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 8.3e-16 90.9 134 37.3
SMO270G0124 Selaginella moellendorffii HOM05D013654 ORTHO05D374467 1.2e-14 87.0 66 68.2
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 3.5e-14 85.5 577 23.9
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 2.9e-13 82.4 262 30.2
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 1.6e-11 76.6 305 28.2
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 2.1e-11 76.3 94 51.1
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 4.7e-11 75.1 86 46.5
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 3.4e-09 68.9 155 29.0
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 4.4e-09 68.6 47 61.7
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 9.8e-09 67.4 147 27.2
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 4.9e-08 65.1 108 43.5
MCO05G072 Micromonas commoda HOM05D000639 ORTHO05D003485 1.4e-07 63.5 265 25.7
PRCOL_00004569 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 4.6e-06 58.5 122 35.2


User provided reference genes

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