Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 0.0e+00 1134.0 541 100.0
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 0.0e+00 1117.1 541 98.5
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 3.8e-291 1004.2 504 95.6
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.1e-288 993.8 575 83.3
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 1.1e-287 992.6 504 95.2
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 5.9e-268 927.2 547 86.1
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.1e-250 869.8 579 75.3
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 5.6e-133 478.8 564 45.7
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 8.0e-132 474.9 596 42.1
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 3.4e-130 469.5 564 44.7
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 7.5e-130 468.4 601 41.8
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 4.9e-129 465.7 596 43.5
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 8.3e-129 464.9 589 41.4
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 1.1e-128 464.5 597 42.0
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 1.4e-128 464.2 565 44.8
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 1.8e-128 463.8 595 42.5
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 1.8e-128 463.8 564 44.7
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.8e-128 463.8 564 44.9
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 4.1e-128 462.6 625 41.0
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 4.1e-128 462.6 601 41.8
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 5.4e-128 462.2 606 41.3
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 9.2e-128 461.5 597 41.0
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 2.7e-127 459.9 595 42.4
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 2.7e-127 459.9 595 42.4
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 2.7e-127 459.9 602 41.0
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 3.5e-127 459.5 588 41.7
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 1.3e-126 457.6 595 42.2
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 2.3e-126 456.8 597 42.4
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 3.9e-126 456.1 595 42.0
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 3.9e-126 456.1 565 43.2
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 3.9e-126 456.1 606 40.9
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 3.9e-126 456.1 596 42.8
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 6.6e-126 455.3 594 42.1
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 6.6e-126 455.3 596 42.3
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 8.6e-126 454.9 601 40.8
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 1.5e-125 454.1 596 40.1
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 3.3e-125 453.0 594 41.8
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 3.3e-125 453.0 604 40.4
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 4.3e-125 452.6 592 41.9
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 4.3e-125 452.6 596 41.3
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 7.3e-125 451.8 596 42.3
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 1.2e-124 451.1 590 41.4
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 1.2e-124 451.1 599 41.4
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 3.6e-124 449.5 596 40.4
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 6.2e-124 448.7 593 41.1
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 8.0e-124 448.4 592 41.7
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 1.1e-123 448.0 595 40.8
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 1.4e-123 447.6 601 41.3
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 1.4e-123 447.6 597 40.9
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 1.8e-123 447.2 596 42.1
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 1.8e-123 447.2 597 41.0
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 3.1e-123 446.4 594 41.9
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 5.2e-123 445.7 591 41.3
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 8.9e-123 444.9 600 40.7
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 8.9e-123 444.9 603 40.6
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 1.5e-122 444.1 600 39.7
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.6e-122 443.4 593 40.5
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.6e-122 443.4 593 40.5
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 7.5e-122 441.8 593 39.5
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 9.8e-122 441.4 594 41.1
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 1.3e-121 441.0 569 41.1
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 1.7e-121 440.7 593 40.8
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 2.2e-121 440.3 588 40.0
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 2.2e-121 440.3 591 39.9
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 4.9e-121 439.1 601 39.6
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 8.3e-121 438.3 602 40.7
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 3.2e-120 436.4 593 40.6
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 3.2e-120 436.4 601 39.9
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 4.1e-120 436.0 595 40.2
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 7.0e-120 435.3 599 40.4
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 2.0e-119 433.7 604 38.4
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 2.0e-119 433.7 585 39.7
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 2.7e-119 433.3 596 40.4
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.7e-119 433.3 597 39.7
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 3.5e-119 433.0 569 40.1
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 4.6e-119 432.6 572 41.6
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 7.8e-119 431.8 605 38.8
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 1.0e-118 431.4 590 41.2
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.3e-118 431.0 598 41.0
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 1.7e-118 430.6 572 41.3
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 2.3e-118 430.3 617 39.5
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 3.9e-118 429.5 599 40.4
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 3.9e-118 429.5 599 38.7
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 5.0e-118 429.1 601 39.6
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 1.5e-117 427.6 598 40.1
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 1.9e-117 427.2 596 38.9
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 2.5e-117 426.8 613 38.5
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 5.6e-117 425.6 599 40.1
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 2.3e-115 420.2 634 38.3
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 2.4e-112 410.2 601 37.1
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 3.5e-111 406.4 681 35.4
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 4.6e-111 406.0 599 37.7
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 6.6e-110 402.1 457 45.7
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.5e-109 401.0 590 37.8
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 4.7e-108 396.0 588 39.3
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 4.1e-104 382.9 468 44.0
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 5.4e-104 382.5 616 36.5
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 4.6e-103 379.4 587 38.8
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 9.0e-99 365.2 561 37.3
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 4.4e-98 362.8 583 37.2
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.1e-96 358.2 509 38.5
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 3.2e-96 356.7 590 36.1
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.2e-96 356.3 518 38.2
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 3.5e-95 353.2 660 33.9
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 2.9e-81 307.0 520 37.7
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.9e-73 279.6 357 42.9
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 5.1e-70 269.6 312 45.8
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 3.7e-68 263.5 346 43.4
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.0e-54 218.8 435 32.6
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 2.6e-53 214.2 207 50.7
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 2.8e-52 210.7 494 31.4
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 2.5e-48 197.6 257 38.1
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.3e-44 185.3 205 48.3
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 4.1e-43 180.3 280 36.4
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 8.0e-39 166.0 489 27.0
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 4.4e-37 160.2 183 44.3
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 1.0e-33 149.1 202 39.6
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 3.7e-28 130.6 403 25.8
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 1.3e-25 122.1 147 40.8
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 1.7e-25 121.7 519 22.7
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.5e-24 118.6 182 35.2
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 1.3e-17 95.5 87 58.6
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 1.3e-17 95.5 87 58.6
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.9e-17 94.4 185 30.8
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 3.0e-14 84.3 521 23.0
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 8.9e-14 82.8 265 28.7
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 1.9e-11 75.1 86 46.5
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 7.0e-11 73.2 245 29.0
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 9.2e-11 72.8 155 30.3
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 7.8e-10 69.7 218 28.9
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 1.7e-09 68.6 47 61.7
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 3.3e-08 64.3 51 60.8


User provided reference genes

Program Settings