Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0047 Selaginella moellendorffii HOM05D002086 ORTHO05D004968 3.6e-121 438.7 308 100.0
A09p55850 Brassica napus HOM05D002086 ORTHO05D004968 2.6e-10 70.5 133 38.3
BraA09t40988Z Brassica rapa HOM05D002086 ORTHO05D004968 2.6e-10 70.5 133 38.3
MBI15_g10897_MAGBIO Magnolia biondii HOM05D002086 ORTHO05D004968 2.9e-09 67.0 140 37.9
BcaC07g40889 Brassica carinata HOM05D002086 ORTHO05D004968 3.7e-09 66.6 135 37.0
BolC8t51457H Brassica oleracea HOM05D002086 ORTHO05D004968 3.7e-09 66.6 135 37.0
PSO170G0198 Papaver somniferum HOM05D002086 ORTHO05D004968 3.7e-09 66.6 150 36.7
C08p38850 Brassica napus HOM05D002086 ORTHO05D004968 1.1e-08 65.1 135 36.3
PSO017G4449 Papaver somniferum HOM05D002086 ORTHO05D004968 1.4e-08 64.7 148 35.8
SMO356G0647 Selaginella moellendorffii HOM05D001865 ORTHO05D001815 1.4e-08 64.7 128 39.8
Glyma.06G063000 Glycine max HOM05D002086 ORTHO05D004968 1.9e-08 64.3 141 37.6
AT2G25130 Arabidopsis thaliana HOM05D002086 ORTHO05D004968 5.4e-08 62.8 142 35.2
SalBow4G1182 Salvia bowleyana HOM05D002086 ORTHO05D004968 7.1e-08 62.4 135 37.0
Nitab4.5_0000486g0090 Nicotiana tabacum HOM05D002086 ORTHO05D004968 9.2e-08 62.0 133 35.3
Nitab4.5_0004637g0070 Nicotiana tabacum HOM05D002086 ORTHO05D004968 9.2e-08 62.0 133 35.3
Phvul.009G088200 Phaseolus vulgaris HOM05D002086 ORTHO05D004968 9.2e-08 62.0 145 46.2
vmacro05132 Vaccinium macrocarpon HOM05D002086 ORTHO05D004968 9.2e-08 62.0 144 36.8
BcaNung03121 Brassica carinata HOM05D002086 ORTHO05D004968 1.2e-07 61.6 150 36.0
Glyma.04G062000 Glycine max HOM05D002086 ORTHO05D004968 1.2e-07 61.6 145 36.6
Solyc08g042100.3 Solanum lycopersicum HOM05D002086 ORTHO05D004968 1.2e-07 61.6 137 38.0
Sopen08g012600 Solanum pennellii HOM05D002086 ORTHO05D004968 1.2e-07 61.6 137 38.0
PGSC0003DMG400000963 Solanum tuberosum HOM05D002086 ORTHO05D004968 1.2e-07 61.6 137 38.0
Actinidia22300 Actinidia chinensis HOM05D002086 ORTHO05D004968 2.1e-07 60.8 133 36.8
AL7G20050 Arabidopsis lyrata HOM05D002086 ORTHO05D004968 2.1e-07 60.8 151 36.4
Aqoxy5G00905 Aquilegia oxysepala HOM05D002086 ORTHO05D004968 2.7e-07 60.5 148 33.1
Carub.0004s0473 Capsella rubella HOM05D002086 ORTHO05D004968 2.7e-07 60.5 147 36.1
Thhalv10000153m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 2.7e-07 60.5 132 36.4
AL4G16300 Arabidopsis lyrata HOM05D002086 ORTHO05D004968 3.5e-07 60.1 142 34.5
Thhalv10024943m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 3.5e-07 60.1 141 36.2
arahy.Tifrunner.gnm1.ann1.L416IP Arachis hypogaea HOM05D002086 ORTHO05D004968 4.6e-07 59.7 142 35.2
arahy.Tifrunner.gnm1.ann1.MK6ALS Arachis hypogaea HOM05D002086 ORTHO05D004968 4.6e-07 59.7 142 35.2
CARHR239820 Cardamine hirsuta HOM05D002086 ORTHO05D004968 4.6e-07 59.7 141 35.5
Dinv01596 Davidia involucrata HOM05D002086 ORTHO05D004968 4.6e-07 59.7 150 36.0
Rhsim07G0163800 Rhododendron simsii HOM05D002086 ORTHO05D004968 4.6e-07 59.7 144 35.4
AT4G31890 Arabidopsis thaliana HOM05D002086 ORTHO05D004968 6.0e-07 59.3 141 35.5
Dinv16456 Davidia involucrata HOM05D002086 ORTHO05D004968 6.0e-07 59.3 150 35.3
ECA246G0687 Erigeron canadensis HOM05D002086 ORTHO05D004968 6.0e-07 59.3 160 33.1
Sp7g29710 Schrenkiella parvula HOM05D002086 ORTHO05D004968 6.0e-07 59.3 149 34.9
Aa31sc1102G10 Aethionema arabicum HOM05D002086 ORTHO05D004968 7.8e-07 58.9 142 34.5
arahy.Tifrunner.gnm1.ann1.LJ933N Arachis hypogaea HOM05D002086 ORTHO05D004968 7.8e-07 58.9 141 36.2
BcaC09g51980 Brassica carinata HOM05D002086 ORTHO05D004968 7.8e-07 58.9 150 33.3
C01p07010 Brassica napus HOM05D002086 ORTHO05D004968 7.8e-07 58.9 150 33.3
BolC1t00696H Brassica oleracea HOM05D002086 ORTHO05D004968 7.8e-07 58.9 150 33.3
Dinv40991 Davidia involucrata HOM05D002086 ORTHO05D004968 7.8e-07 58.9 150 36.0
Migut.E00553 Erythranthe guttata HOM05D002086 ORTHO05D004968 7.8e-07 58.9 136 36.0
Gohir.D06G103100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 7.8e-07 58.9 136 36.0
Gorai.010G118100 Gossypium raimondii HOM05D002086 ORTHO05D004968 7.8e-07 58.9 136 36.0
A01p06360 Brassica napus HOM05D002086 ORTHO05D004968 1.0e-06 58.5 150 34.0
BraA01t00601Z Brassica rapa HOM05D002086 ORTHO05D004968 1.0e-06 58.5 150 34.0
CAN.G651.6 Capsicum annuum HOM05D002086 ORTHO05D004968 1.0e-06 58.5 127 37.8
Ciclev10008009m.g Citrus clementina HOM05D002086 ORTHO05D004968 1.0e-06 58.5 143 34.3
Lsat_1_v5_gn_3_22020 Lactuca sativa HOM05D002086 ORTHO05D004968 1.0e-06 58.5 165 33.3
MD08G1057900 Malus domestica HOM05D002086 ORTHO05D004968 1.0e-06 58.5 130 38.5
Aa31LG2G18200 Aethionema arabicum HOM05D002086 ORTHO05D004968 1.3e-06 58.2 141 36.2
SGA_v2.0_scaffold157G37396 Striga asiatica HOM05D002086 ORTHO05D004968 1.3e-06 58.2 159 32.1
VMungo1309G1135 Vigna mungo HOM05D002086 ORTHO05D004968 1.3e-06 58.2 145 49.0
arahy.Tifrunner.gnm1.ann1.1EF81S Arachis hypogaea HOM05D002086 ORTHO05D004968 1.7e-06 57.8 141 35.5
Lj8A736T34 Lonicera japonica HOM05D002086 ORTHO05D004968 1.7e-06 57.8 150 34.7
TPR.G38917 Trifolium pratense HOM05D002086 ORTHO05D004968 1.7e-06 57.8 158 32.9
BcaB08g35154 Brassica carinata HOM05D002086 ORTHO05D004968 2.3e-06 57.4 142 33.8
Duzib187G0822 Durio zibethinus HOM05D002086 ORTHO05D004968 2.3e-06 57.4 146 34.9
FAN20G1050 Fragaria x ananassa HOM05D002086 ORTHO05D004968 2.3e-06 57.4 128 35.9
FAN27G1068 Fragaria x ananassa HOM05D002086 ORTHO05D004968 2.3e-06 57.4 128 35.9
Carub.0007s0865 Capsella rubella HOM05D002086 ORTHO05D004968 3.0e-06 57.0 139 35.3
Gohir.A06G101100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 3.0e-06 57.0 134 34.3
Lj5g0014488 Lotus japonicus HOM05D002086 ORTHO05D004968 3.0e-06 57.0 157 33.1
Peaxi162Scf00632g00311 Petunia axillaris HOM05D002086 ORTHO05D004968 3.0e-06 57.0 131 35.9
Psat6g027240 Pisum sativum HOM05D002086 ORTHO05D004968 3.0e-06 57.0 153 34.6
SEGI_18796 Sequoiadendron giganteum HOM05D002086 ORTHO05D006228 3.0e-06 57.0 149 32.2
Sc09g0010520 Simmondsia chinensis HOM05D002086 ORTHO05D004968 3.0e-06 57.0 143 31.5
HPP92_018555 Vanilla planifolia HOM05D002086 ORTHO05D004968 3.0e-06 57.0 148 37.8
CARHR116540 Cardamine hirsuta HOM05D002086 ORTHO05D004968 3.9e-06 56.6 142 35.2
Duzib168G2069 Durio zibethinus HOM05D002086 ORTHO05D004968 3.9e-06 56.6 146 34.9
Lsat_1_v5_gn_6_77701 Lactuca sativa HOM05D002086 ORTHO05D004968 3.9e-06 56.6 159 30.8
RcHm_v2.0_Chr6g0299591 Rosa chinensis HOM05D002086 ORTHO05D004968 3.9e-06 56.6 116 38.8
Ca_13056_v3 Cicer arietinum L. HOM05D002086 ORTHO05D004968 5.1e-06 56.2 156 33.3
FvH4_2g40980 Fragaria vesca HOM05D002086 ORTHO05D004968 5.1e-06 56.2 128 35.2
Manes.16G128100 Manihot esculenta HOM05D002086 ORTHO05D004968 5.1e-06 56.2 143 35.7
Medtr1g014420 Medicago truncatula HOM05D002086 ORTHO05D004968 5.1e-06 56.2 154 35.1
Nn2g12323 Nelumbo nucifera HOM05D002086 ORTHO05D004968 5.1e-06 56.2 140 35.0
SpUn0318_0010 Schrenkiella parvula HOM05D002086 ORTHO05D004968 5.1e-06 56.2 146 34.2
Atru.chr7.2533 Acer truncatum HOM05D002086 ORTHO05D004968 6.6e-06 55.8 140 33.6
MSTRG.11591 Avicennia marina HOM05D002086 ORTHO05D004968 6.6e-06 55.8 160 33.1
AUR62012467 Chenopodium quinoa HOM05D002086 ORTHO05D004968 6.6e-06 55.8 182 32.4
MD15G1038300 Malus domestica HOM05D002086 ORTHO05D004968 6.6e-06 55.8 129 36.4
Medtr3g106140 Medicago truncatula HOM05D002086 ORTHO05D004968 6.6e-06 55.8 153 35.9
Oeu000762.1 Olea europaea HOM05D002086 ORTHO05D004968 6.6e-06 55.8 130 33.8
Phvul.001G045900 Phaseolus vulgaris HOM05D002086 ORTHO05D004968 8.6e-06 55.5 125 34.4
VMungo0647G1059 Vigna mungo HOM05D002086 ORTHO05D004968 8.6e-06 55.5 159 33.3


User provided reference genes

Program Settings