Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0046 Selaginella moellendorffii HOM05D003303 ORTHO05D031187 5.2e-102 374.4 189 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2366 Anthoceros agrestis HOM05D003303 ORTHO05D031187 2.2e-28 129.8 171 37.4
Mapoly0024s0030 Marchantia polymorpha HOM05D003303 ORTHO05D031187 2.9e-28 129.4 196 36.7
ATR1156G058 Amborella trichopoda HOM05D003303 ORTHO05D003887 1.2e-13 80.9 174 28.7
PGR044G1059 Punica granatum HOM05D003303 ORTHO05D003887 1.2e-13 80.9 190 28.4
Thecc.06G071200 Theobroma cacao HOM05D003303 ORTHO05D003887 2.6e-13 79.7 168 31.5
Nn8g39390 Nelumbo nucifera HOM05D003303 ORTHO05D003887 4.5e-13 79.0 186 28.0
AT5G11280 Arabidopsis thaliana HOM05D003303 ORTHO05D003887 5.8e-13 78.6 181 27.6
Manes.11G053300 Manihot esculenta HOM05D003303 ORTHO05D003887 5.8e-13 78.6 176 33.0
vmacro11152 Vaccinium macrocarpon HOM05D003303 ORTHO05D003887 5.8e-13 78.6 174 29.9
TAR636G1230 Trochodendron aralioides HOM05D003303 ORTHO05D003887 1.0e-12 77.8 174 27.6
Hma1.2p1_0000F.1_g000400 Hydrangea macrophylla HOM05D003303 ORTHO05D003887 1.3e-12 77.4 181 27.6
SEGI_05060 Sequoiadendron giganteum HOM05D003303 ORTHO05D003887 1.7e-12 77.0 174 31.0
Atru.chr7.2388 Acer truncatum HOM05D003303 ORTHO05D003887 2.9e-12 76.3 174 28.2
HanXRQChr08g0234811 Helianthus annuus HOM05D003303 ORTHO05D003887 2.9e-12 76.3 169 29.0
Aa31LG4G490 Aethionema arabicum HOM05D003303 ORTHO05D003887 3.8e-12 75.9 133 37.6
Lsat_1_v5_gn_5_30500 Lactuca sativa HOM05D003303 ORTHO05D003887 4.9e-12 75.5 170 27.6
Aqoxy7G03733 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 6.5e-12 75.1 177 28.8
Eucgr.C02806 Eucalyptus grandis HOM05D003303 ORTHO05D003887 6.5e-12 75.1 187 26.2
Lalb_Chr23g0268741 Lupinus albus HOM05D003303 ORTHO05D003887 6.5e-12 75.1 188 29.8
THA.LOC104799228 Tarenaya hassleriana HOM05D003303 ORTHO05D003887 6.5e-12 75.1 174 27.6
Cpa.g.sc10.225 Carica papaya HOM05D003303 ORTHO05D003887 8.4e-12 74.7 168 29.2
Manes.03G016900 Manihot esculenta HOM05D003303 ORTHO05D003887 8.4e-12 74.7 174 29.3
Nn2g11966 Nelumbo nucifera HOM05D003303 ORTHO05D003887 8.4e-12 74.7 174 27.6
Sc09g0008410 Simmondsia chinensis HOM05D003303 ORTHO05D003887 8.4e-12 74.7 203 28.1
CSS0039322 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 1.1e-11 74.3 174 28.2
CiPaw.08G012800 Carya illinoinensis HOM05D003303 ORTHO05D003887 1.1e-11 74.3 174 27.6
Os01g0555300 Oryza sativa ssp. japonica HOM05D003303 ORTHO05D003887 1.1e-11 74.3 176 26.1
Dinv30167 Davidia involucrata HOM05D003303 ORTHO05D003887 1.4e-11 73.9 174 26.4
Gohir.A08G236700 Gossypium hirsutum HOM05D003303 ORTHO05D003887 1.4e-11 73.9 174 27.6
BcaB08g37075 Brassica carinata HOM05D003303 ORTHO05D003887 2.5e-11 73.2 185 27.6
CANSAT64G2029 Cannabis sativa HOM05D003303 ORTHO05D003887 2.5e-11 73.2 179 27.4
CBR_g49784 Chara braunii HOM05D003303 ORTHO05D003887 2.5e-11 73.2 179 27.4
AUR62030643 Chenopodium quinoa HOM05D003303 ORTHO05D003887 2.5e-11 73.2 174 28.7
ClCG08G013220 Citrullus lanatus HOM05D003303 ORTHO05D003887 2.5e-11 73.2 174 27.0
Lj1g0001911 Lotus japonicus HOM05D003303 ORTHO05D003887 2.5e-11 73.2 174 28.2
Sp6g32280 Schrenkiella parvula HOM05D003303 ORTHO05D003887 2.5e-11 73.2 174 27.0
Sed0002484 Sechium edule HOM05D003303 ORTHO05D003887 2.5e-11 73.2 174 28.2
FvH4_2g29460 Fragaria vesca HOM05D003303 ORTHO05D003887 3.2e-11 72.8 182 28.0
FAN27G1304 Fragaria x ananassa HOM05D003303 ORTHO05D003887 3.2e-11 72.8 182 27.5
Lj8A668G29 Lonicera japonica HOM05D003303 ORTHO05D003887 3.2e-11 72.8 186 28.0
Lj8A679G18 Lonicera japonica HOM05D003303 ORTHO05D003887 3.2e-11 72.8 186 28.0
Sed0025998 Sechium edule HOM05D003303 ORTHO05D003887 3.2e-11 72.8 174 27.0
Actinidia22360 Actinidia chinensis HOM05D003303 ORTHO05D003887 4.2e-11 72.4 175 27.4
CiPaw.01G244800 Carya illinoinensis HOM05D003303 ORTHO05D003887 4.2e-11 72.4 201 28.9
Duzib168G0888 Durio zibethinus HOM05D003303 ORTHO05D003887 4.2e-11 72.4 174 25.3
Aa31LG3G15910 Aethionema arabicum HOM05D003303 ORTHO05D003887 5.5e-11 72.0 174 25.9
Aqoxy7G02100 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 5.5e-11 72.0 181 27.1
MSTRG.25996 Avicennia marina HOM05D003303 ORTHO05D003887 5.5e-11 72.0 174 29.9
Carub.0006s0975 Capsella rubella HOM05D003303 ORTHO05D003887 5.5e-11 72.0 181 24.9
FAN20G0011 Fragaria x ananassa HOM05D003303 ORTHO05D003887 5.5e-11 72.0 182 27.5
Glyma.06G069800 Glycine max HOM05D003303 ORTHO05D003887 5.5e-11 72.0 174 26.4
Peaxi162Scf00603g00012 Petunia axillaris HOM05D003303 ORTHO05D003887 5.5e-11 72.0 174 28.2
Nitab4.5_0000447g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 7.1e-11 71.6 174 29.3
Ah.12g064040 Amaranthus hybridus HOM05D003303 ORTHO05D003887 9.3e-11 71.2 175 30.3
Gohir.A10G076100 Gossypium hirsutum HOM05D003303 ORTHO05D003887 9.3e-11 71.2 174 30.5
Gohir.D08G257300 Gossypium hirsutum HOM05D003303 ORTHO05D003887 9.3e-11 71.2 174 27.0
Sopen06g012300 Solanum pennellii HOM05D003303 ORTHO05D003887 9.3e-11 71.2 164 29.9
TWI63G1648 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 9.3e-11 71.2 174 25.9
arahy.Tifrunner.gnm1.ann1.CWZP7X Arachis hypogaea HOM05D003303 ORTHO05D003887 1.2e-10 70.9 189 26.5
arahy.Tifrunner.gnm1.ann1.DJG6PN Arachis hypogaea HOM05D003303 ORTHO05D003887 1.2e-10 70.9 189 26.5
Cc08_g00960 Coffea canephora HOM05D003303 ORTHO05D003887 1.2e-10 70.9 176 28.4
Thhalv10014677m.g Eutrema salsugineum HOM05D003303 ORTHO05D003887 1.2e-10 70.9 174 25.9
Gorai.011G081400 Gossypium raimondii HOM05D003303 ORTHO05D003887 1.2e-10 70.9 174 29.9
SalBow1G3705 Salvia bowleyana HOM05D003303 ORTHO05D003887 1.2e-10 70.9 170 27.1
HPP92_023167 Vanilla planifolia HOM05D003303 ORTHO05D003887 1.2e-10 70.9 184 26.1
Lalb_Chr08g0243991 Lupinus albus HOM05D003303 ORTHO05D003887 1.6e-10 70.5 173 28.3
VMungo1309G1624 Vigna mungo HOM05D003303 ORTHO05D003887 1.6e-10 70.5 189 28.0
A10p26440 Brassica napus HOM05D003303 ORTHO05D003887 2.1e-10 70.1 185 26.5
BraA10t44701Z Brassica rapa HOM05D003303 ORTHO05D003887 2.1e-10 70.1 185 26.5
Ciclev10009474m.g Citrus clementina HOM05D003303 ORTHO05D003887 2.1e-10 70.1 174 27.6
Migut.E01788 Erythranthe guttata HOM05D003303 ORTHO05D003887 2.1e-10 70.1 174 27.6
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.1e-10 70.1 175 29.1
GSVIVG01035826001 Vitis vinifera HOM05D003303 ORTHO05D003887 2.1e-10 70.1 175 25.1
Rhsim02G0195600 Rhododendron simsii HOM05D003303 ORTHO05D003887 2.7e-10 69.7 166 28.3
RcHm_v2.0_Chr6g0298251 Rosa chinensis HOM05D003303 ORTHO05D003887 2.7e-10 69.7 179 27.4
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 2.7e-10 69.7 173 32.4
CAN.G340.3 Capsicum annuum HOM05D003303 ORTHO05D003887 3.5e-10 69.3 174 28.2
Gorai.004G274300 Gossypium raimondii HOM05D003303 ORTHO05D003887 3.5e-10 69.3 174 27.0
Potri.006G251600 Populus trichocarpa HOM05D003303 ORTHO05D003887 3.5e-10 69.3 174 27.0
SGA_v2.0_scaffold64G21909 Striga asiatica HOM05D003303 ORTHO05D003887 3.5e-10 69.3 169 29.0
TWI34G1555 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 3.5e-10 69.3 174 25.3
Zm00001eb162550 Zea mays HOM05D003303 ORTHO05D003887 3.5e-10 69.3 192 26.0
Zm00001eb342310 Zea mays HOM05D003303 ORTHO05D003887 3.5e-10 69.3 184 25.5
BolC9t59382H Brassica oleracea HOM05D003303 ORTHO05D003887 4.6e-10 68.9 170 27.6
Glyma.04G068100 Glycine max HOM05D003303 ORTHO05D003887 4.6e-10 68.9 174 25.3
Phvul.009G094400 Phaseolus vulgaris HOM05D003303 ORTHO05D003887 4.6e-10 68.9 189 26.5
A02p23720 Brassica napus HOM05D003303 ORTHO05D003887 6.1e-10 68.6 169 34.3
BcaC03g15993 Brassica carinata HOM05D003303 ORTHO05D003887 7.9e-10 68.2 170 32.4
BcaC04g19244 Brassica carinata HOM05D003303 ORTHO05D003887 7.9e-10 68.2 170 27.6
C02p37480 Brassica napus HOM05D003303 ORTHO05D003887 7.9e-10 68.2 170 32.4
C09p65610 Brassica napus HOM05D003303 ORTHO05D003887 7.9e-10 68.2 170 27.6
Actinidia13249 Actinidia chinensis HOM05D003303 ORTHO05D003887 1.3e-09 67.4 174 24.7
EL10Ac2g02608 Beta vulgaris HOM05D003303 ORTHO05D003887 1.3e-09 67.4 177 28.2
Atru.chr1.3071 Acer truncatum HOM05D003303 ORTHO05D003887 1.8e-09 67.0 196 28.6
BraA02t07365Z Brassica rapa HOM05D003303 ORTHO05D018608 1.8e-09 67.0 183 32.2
Mapoly0048s0064 Marchantia polymorpha HOM05D003303 ORTHO05D003887 1.8e-09 67.0 133 33.1
Sc10g0005730 Simmondsia chinensis HOM05D003303 ORTHO05D003887 1.8e-09 67.0 188 29.3
CARHR074280 Cardamine hirsuta HOM05D003303 ORTHO05D003887 2.3e-09 66.6 133 34.6
Ciclev10026958m.g Citrus clementina HOM05D003303 ORTHO05D003887 3.0e-09 66.2 174 26.4
Duzib235G1292 Durio zibethinus HOM05D003303 ORTHO05D003887 3.9e-09 65.9 170 26.5
Nitab4.5_0002257g0020 Nicotiana tabacum HOM05D003303 ORTHO05D003887 3.9e-09 65.9 170 28.2
COL.COLO4_00194 Corchorus olitorius HOM05D003303 ORTHO05D003887 5.1e-09 65.5 157 28.0
Prupe.1G478100 Prunus persica HOM05D003303 ORTHO05D003887 5.1e-09 65.5 174 26.4
BcaC02g10780 Brassica carinata HOM05D003303 ORTHO05D003887 6.7e-09 65.1 136 35.3
C04p25150 Brassica napus HOM05D003303 ORTHO05D003887 6.7e-09 65.1 136 35.3
DCAR_016254 Daucus carota HOM05D003303 ORTHO05D003887 6.7e-09 65.1 182 25.8
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.7e-09 65.1 175 28.0
Nitab4.5_0006574g0030 Nicotiana tabacum HOM05D003303 ORTHO05D003887 6.7e-09 65.1 170 26.5
RcHm_v2.0_Chr2g0136501 Rosa chinensis HOM05D003303 ORTHO05D003887 6.7e-09 65.1 175 29.1
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.7e-09 64.7 175 28.0
Medtr3g107550 Medicago truncatula HOM05D003303 ORTHO05D003887 8.7e-09 64.7 182 26.4
SMO358G0079 Selaginella moellendorffii HOM05D003303 ORTHO05D003887 8.7e-09 64.7 169 29.6
AagrBONN_evm.TU.Sc2ySwM_228.3014 Anthoceros agrestis HOM05D003303 ORTHO05D003887 1.5e-08 63.9 139 31.7
Carub.0002s2732 Capsella rubella HOM05D003303 ORTHO05D003887 1.5e-08 63.9 130 36.2
FvH4_6g30260 Fragaria vesca HOM05D003303 ORTHO05D003887 1.5e-08 63.9 175 28.0
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-08 63.9 175 28.0
MD17G1206100 Malus domestica HOM05D003303 ORTHO05D003887 1.5e-08 63.9 170 27.6
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 1.9e-08 63.5 177 26.0
Peaxi162Scf00274g00860 Petunia axillaris HOM05D003303 ORTHO05D003887 1.9e-08 63.5 168 26.8
CDE05G1646 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 2.5e-08 63.2 173 28.3
Psat5g028480 Pisum sativum HOM05D003303 ORTHO05D003887 2.5e-08 63.2 174 26.4
Solyc03g116470.2 Solanum lycopersicum HOM05D003303 ORTHO05D003887 2.5e-08 63.2 170 25.9
Sopen03g035360 Solanum pennellii HOM05D003303 ORTHO05D003887 2.5e-08 63.2 170 25.9
TPR.G31761 Trifolium pratense HOM05D003303 ORTHO05D003887 2.5e-08 63.2 189 25.4
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 3.3e-08 62.8 170 27.1
COL.COLO4_12906 Corchorus olitorius HOM05D003303 ORTHO05D003887 4.3e-08 62.4 133 30.1
ECA234G0613 Erigeron canadensis HOM05D003303 ORTHO05D003887 4.3e-08 62.4 174 28.2
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 5.7e-08 62.0 160 26.9
Lj3g0010686 Lotus japonicus HOM05D003303 ORTHO05D003887 7.4e-08 61.6 170 30.0
Nitab4.5_0000268g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 9.7e-08 61.2 183 27.9
PGSC0003DMG400017130 Solanum tuberosum HOM05D003303 ORTHO05D003887 9.7e-08 61.2 172 25.6
CANSAT56G3409 Cannabis sativa HOM05D003303 ORTHO05D003887 1.3e-07 60.8 134 30.6
PSO210G7678 Papaver somniferum HOM05D003303 ORTHO05D003887 1.3e-07 60.8 174 25.9
PGR102G3177 Punica granatum HOM05D003303 ORTHO05D003887 1.3e-07 60.8 159 27.7
Sed0026368 Sechium edule HOM05D003303 ORTHO05D003887 1.6e-07 60.5 184 29.3
Gohir.D10G075451 Gossypium hirsutum HOM05D003303 ORTHO05D003887 2.2e-07 60.1 176 28.4
BolC4t24019H Brassica oleracea HOM05D003303 ORTHO05D003887 8.2e-07 58.2 136 33.8
CSS0042620 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 8.2e-07 58.2 134 29.9
Glyma.07G032100 Glycine max HOM05D003303 ORTHO05D003887 8.2e-07 58.2 172 28.5
Sabra03G0036000 Salix brachista HOM05D003303 ORTHO05D003887 1.8e-06 57.0 161 31.1
SalBow2G1656 Salvia bowleyana HOM05D003303 ORTHO05D003887 1.8e-06 57.0 115 33.0
AT1G80200 Arabidopsis thaliana HOM05D003303 ORTHO05D003887 4.1e-06 55.8 134 29.9
BcaB01g06298 Brassica carinata HOM05D003303 ORTHO05D003887 4.1e-06 55.8 169 26.0
Migut.I00799 Erythranthe guttata HOM05D003303 ORTHO05D003887 6.9e-06 55.1 118 27.1


User provided reference genes

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