Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 9.8e-132 473.8 297 100.0
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.1e-61 239.6 304 49.7
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.5e-60 237.3 298 54.0
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.6e-60 236.5 304 49.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 3.4e-60 236.1 307 54.4
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 4.5e-60 235.7 304 49.7
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.5e-60 235.7 296 50.0
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 5.9e-60 235.3 293 59.0
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 7.7e-60 235.0 308 48.7
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-59 234.2 308 48.7
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.3e-59 234.2 295 57.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.7e-59 233.8 296 50.0
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.7e-59 233.8 296 50.0
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 2.2e-59 233.4 296 50.3
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 2.2e-59 233.4 295 49.5
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.2e-59 233.4 296 49.0
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.9e-59 233.0 293 50.2
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.9e-59 233.0 293 50.2
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.8e-59 232.6 296 50.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 5.0e-59 232.3 293 50.2
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 5.0e-59 232.3 308 48.4
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 5.0e-59 232.3 296 49.0
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 6.5e-59 231.9 299 53.8
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.5e-59 231.9 295 56.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 6.5e-59 231.9 290 50.7
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 8.5e-59 231.5 297 57.2
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.1e-58 231.1 296 53.0
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.1e-58 231.1 296 57.1
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.1e-58 231.1 295 48.8
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.4e-58 230.7 295 57.3
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-58 230.7 295 49.8
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.9e-58 230.3 296 55.1
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.5e-58 229.9 295 49.8
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 3.2e-58 229.6 302 57.0
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.2e-58 229.2 295 48.1
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.5e-58 228.8 295 49.5
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 5.5e-58 228.8 301 54.2
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 5.5e-58 228.8 297 54.9
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 7.2e-58 228.4 294 55.1
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 9.4e-58 228.0 296 58.4
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 9.4e-58 228.0 296 54.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.2e-57 227.6 297 54.5
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.6e-57 227.3 297 59.6
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.6e-57 227.3 299 49.5
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 2.1e-57 226.9 297 54.2
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 2.1e-57 226.9 289 49.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 2.7e-57 226.5 296 48.6
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 3.6e-57 226.1 293 50.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 4.7e-57 225.7 295 49.2
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 4.7e-57 225.7 291 49.8
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 4.7e-57 225.7 293 49.1
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.7e-57 225.7 296 55.1
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 4.7e-57 225.7 300 48.0
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 4.7e-57 225.7 298 48.3
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 6.1e-57 225.3 294 51.7
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 7.9e-57 224.9 297 55.2
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 7.9e-57 224.9 297 55.2
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 7.9e-57 224.9 296 55.1
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 7.9e-57 224.9 290 49.7
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.0e-56 224.6 293 55.3
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.0e-56 224.6 295 55.3
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.0e-56 224.6 294 53.7
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.0e-56 224.6 294 54.4
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.4e-56 224.2 298 54.4
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.4e-56 224.2 297 56.2
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-56 224.2 302 55.3
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-56 224.2 302 56.3
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.4e-56 224.2 295 49.2
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 1.4e-56 224.2 296 55.7
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.4e-56 224.2 296 56.8
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.8e-56 223.8 293 51.9
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.8e-56 223.8 298 47.7
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.8e-56 223.8 290 52.4
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.8e-56 223.8 299 48.8
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.3e-56 223.4 292 52.1
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 3.0e-56 223.0 297 55.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.0e-56 223.0 297 53.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.9e-56 222.6 297 55.6
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 3.9e-56 222.6 294 55.4
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.9e-56 222.6 294 48.3
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.1e-56 222.2 294 53.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 5.1e-56 222.2 296 47.6
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 6.7e-56 221.9 303 46.5
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 8.8e-56 221.5 294 55.8
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.1e-55 221.1 296 55.1
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-55 221.1 294 56.8
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.5e-55 220.7 298 56.0
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.5e-55 220.7 293 53.9
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.5e-55 220.7 297 50.5
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.0e-55 220.3 296 47.3
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 2.0e-55 220.3 294 53.4
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.0e-55 220.3 296 47.6
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.0e-55 220.3 297 47.1
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.6e-55 219.9 300 56.0
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 2.6e-55 219.9 294 54.1
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 3.3e-55 219.5 296 55.4
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.4e-55 219.2 294 56.1
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 7.4e-55 218.4 296 47.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 7.4e-55 218.4 297 53.2
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 9.7e-55 218.0 295 52.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.7e-54 217.2 291 54.3
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.7e-54 216.1 295 54.6
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.8e-54 215.7 302 59.9
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.8e-54 215.7 297 54.5
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 6.3e-54 215.3 296 46.6
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 6.3e-54 215.3 299 47.5
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 8.2e-54 214.9 297 47.1
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.1e-53 214.5 296 53.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.8e-53 213.8 298 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-53 213.4 302 60.9
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.4e-53 213.4 294 53.7
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.4e-53 213.4 291 54.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.5e-52 210.7 289 53.6
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.5e-52 210.7 291 47.8
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.9e-50 203.8 286 57.0
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.5e-50 202.2 310 45.8
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.3e-48 196.8 290 49.7
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.1e-41 173.7 329 47.1
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.7e-41 172.6 281 47.0
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 7.5e-39 165.2 280 42.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 9.7e-39 164.9 212 49.5
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 6.3e-38 162.2 286 41.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.8e-37 160.6 290 45.2
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 3.8e-35 152.9 239 48.5
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.9e-34 150.6 242 41.3
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 3.2e-34 149.8 240 42.1
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 5.7e-31 139.0 187 56.7
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.4e-29 134.4 252 48.4
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 2.4e-29 133.7 233 44.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 7.7e-28 128.6 306 47.1
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 1.2e-25 121.3 321 33.0
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 9.8e-23 111.7 288 31.6
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.2e-20 104.8 123 50.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.5e-20 103.2 189 42.3
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.3e-19 101.3 123 50.4
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 6.6e-19 99.0 80 66.2
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.3e-18 96.3 81 65.4
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.8e-16 90.9 69 69.6
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.9e-13 80.9 128 43.0
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.2e-13 80.1 57 71.9
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.2e-12 78.2 111 45.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 6.0e-12 75.9 68 64.7
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 5.0e-11 72.8 83 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.1e-09 67.4 72 55.6
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.1e-08 65.1 134 29.1
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 4.4e-07 59.7 157 33.1
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-06 57.8 135 38.5
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.7e-06 57.8 135 38.5
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.7e-06 57.8 135 38.5
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 2.2e-06 57.4 79 45.6


User provided reference genes

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