Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.6e-166 587.8 292 100.0
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.2e-62 241.9 283 44.2
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.7e-51 207.2 259 44.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-49 199.1 300 40.0
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-48 197.6 290 38.3
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.2e-44 184.5 294 36.1
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.6e-44 181.8 305 35.1
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.9e-43 179.9 293 35.5
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 4.9e-43 179.1 290 35.9
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.1e-42 177.9 299 35.1
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.1e-42 177.9 299 35.1
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.1e-42 177.9 293 35.2
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 3.2e-42 176.4 296 35.5
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 4.2e-42 176.0 293 34.1
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 7.1e-42 175.3 293 34.1
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.6e-41 174.1 296 37.2
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 3.5e-41 172.9 294 33.0
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 3.5e-41 172.9 294 35.0
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.5e-41 172.9 293 34.5
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 3.5e-41 172.9 293 33.8
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.6e-41 172.6 294 35.7
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 6.0e-41 172.2 294 35.7
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 7.8e-41 171.8 297 34.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 7.8e-41 171.8 293 35.2
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.0e-40 171.4 298 33.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.0e-40 171.4 293 33.1
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.7e-40 170.6 293 34.5
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.3e-40 170.2 293 34.8
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 3.0e-40 169.9 300 33.0
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.9e-40 169.5 295 33.9
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.9e-40 169.5 293 32.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 6.6e-40 168.7 293 33.8
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 8.7e-40 168.3 297 33.7
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.5e-39 167.5 297 33.3
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.5e-39 167.5 293 34.8
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-39 167.2 292 34.6
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.9e-39 167.2 283 32.9
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 3.3e-39 166.4 294 35.0
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 3.3e-39 166.4 296 34.5
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.3e-39 166.0 293 34.5
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 5.6e-39 165.6 292 34.2
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 9.6e-39 164.9 291 35.7
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.6e-38 164.1 295 34.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.6e-38 164.1 293 32.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.6e-38 164.1 294 33.0
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.6e-38 164.1 299 31.4
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 2.8e-38 163.3 293 34.1
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 2.8e-38 163.3 295 34.2
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 3.6e-38 162.9 293 33.4
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 6.2e-38 162.2 248 36.3
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 6.2e-38 162.2 294 32.0
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 6.2e-38 162.2 294 34.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 8.1e-38 161.8 286 35.3
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-37 161.4 294 32.0
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-37 161.4 293 33.1
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.1e-37 161.4 292 32.9
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.1e-37 161.4 292 32.9
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.1e-37 161.4 292 33.2
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.1e-37 161.4 295 33.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.4e-37 161.0 296 35.1
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.4e-37 161.0 295 33.6
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.4e-37 161.0 293 31.4
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-37 160.6 315 33.3
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.8e-37 160.6 290 33.1
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 1.8e-37 160.6 292 31.2
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.8e-37 160.6 293 33.1
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.8e-37 160.6 298 33.6
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.4e-37 160.2 294 34.7
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 2.4e-37 160.2 294 32.3
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.1e-37 159.8 291 34.7
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.1e-37 159.8 294 32.3
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 4.0e-37 159.5 295 34.2
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 4.0e-37 159.5 297 32.7
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 5.3e-37 159.1 300 35.0
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 5.3e-37 159.1 293 32.1
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 5.3e-37 159.1 294 33.7
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 9.0e-37 158.3 293 33.1
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.2e-36 157.9 295 33.2
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.2e-36 157.9 294 32.0
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.5e-36 157.5 277 33.9
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 2.6e-36 156.8 293 32.1
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 3.4e-36 156.4 293 31.7
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 3.4e-36 156.4 292 32.2
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 4.5e-36 156.0 297 32.3
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 5.8e-36 155.6 293 32.4
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 7.6e-36 155.2 294 35.0
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 1.3e-35 154.5 230 37.8
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.7e-35 154.1 294 32.3
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 2.2e-35 153.7 293 31.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 2.9e-35 153.3 294 32.3
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.8e-35 152.9 295 33.2
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 3.8e-35 152.9 293 32.4
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.9e-35 152.5 295 32.9
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 4.9e-35 152.5 293 31.7
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 6.4e-35 152.1 295 31.9
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 6.4e-35 152.1 245 34.3
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 6.4e-35 152.1 290 32.8
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.1e-34 151.4 293 32.4
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.1e-34 151.4 293 32.4
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-34 151.0 249 38.6
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.4e-34 151.0 294 31.3
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.4e-34 150.2 288 31.9
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.2e-34 149.4 298 32.2
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 4.2e-34 149.4 294 33.7
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 7.1e-34 148.7 290 31.4
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 7.1e-34 148.7 292 31.5
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 9.3e-34 148.3 295 32.5
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.2e-33 147.9 293 32.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.6e-33 147.5 293 32.1
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.6e-33 147.5 293 30.0
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 2.7e-33 146.7 300 31.3
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 6.0e-33 145.6 301 31.9
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 6.0e-33 145.6 294 30.3
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.0e-32 144.8 294 31.3
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-32 143.7 303 31.4
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-32 143.7 296 31.8
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-32 143.7 297 32.3
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 2.3e-32 143.7 294 31.3
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 2.3e-32 143.7 293 31.4
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-31 141.0 297 31.6
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.5e-31 141.0 194 37.6
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.9e-31 140.6 305 31.5
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-31 140.2 303 32.0
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.6e-30 137.5 186 40.9
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.6e-30 137.5 229 35.8
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 8.1e-30 135.2 260 31.2
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-29 134.8 297 30.3
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.9e-27 125.9 277 31.0
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 4.2e-26 122.9 290 26.9
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 9.3e-26 121.7 293 30.0
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.0e-25 119.0 229 32.3
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.1e-18 98.2 322 26.7
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.9e-18 97.4 169 31.4
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 3.9e-16 89.7 293 27.6
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.8e-06 57.0 147 26.5


User provided reference genes

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