Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 2154.0 1079 100.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1333.5 1083 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1324.7 1087 61.1
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1313.1 1125 59.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1253.0 1082 58.2
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1193.7 1085 54.6
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1186.8 1081 54.6
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1182.9 1088 54.4
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1179.1 1093 54.1
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1178.3 1088 54.5
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1174.1 1091 53.9
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1173.7 1084 54.9
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1172.9 1085 53.3
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1168.7 1085 53.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1167.9 1083 53.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 1078 54.4
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1164.8 1082 53.0
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1162.9 1090 53.1
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1162.5 1090 52.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1161.4 1098 53.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1160.6 1084 54.5
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1158.7 1106 53.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1157.9 1083 53.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1157.1 1077 53.5
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1156.7 1082 53.0
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 1078 52.7
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1154.8 1084 53.0
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1154.0 1088 53.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1153.7 1090 53.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1152.9 1075 53.6
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 1090 53.6
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 1090 52.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1151.0 1074 53.3
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1150.2 1083 53.3
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1150.2 1083 52.5
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 1087 52.9
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1149.0 1075 53.9
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1148.3 1090 53.0
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1147.9 1080 53.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1147.5 1078 52.3
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1147.5 1083 52.9
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1147.5 1078 53.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1147.5 1081 53.1
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1146.7 1090 53.0
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1146.0 1084 53.1
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1146.0 1084 53.1
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1090 53.5
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1144.8 1085 52.2
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 1090 52.7
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1143.3 1086 52.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1143.3 1079 52.7
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1142.9 1073 53.5
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1142.5 1084 53.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1141.3 1087 52.5
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1140.2 1088 53.0
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1139.0 1078 52.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1138.6 1080 52.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1138.6 1086 53.0
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1138.6 1078 53.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1137.1 1078 52.8
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1137.1 1081 51.9
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1137.1 1091 52.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1136.7 1053 53.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1136.7 1086 52.9
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1136.7 1105 51.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1136.3 1090 52.4
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1135.6 1112 50.4
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1135.2 1078 52.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1135.2 1078 52.7
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1135.2 1092 51.7
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 1086 52.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1134.0 1081 52.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 1078 53.0
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1130.5 1078 52.7
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1130.5 1098 51.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 1078 52.2
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 1082 52.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1130.2 1084 53.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 1078 52.4
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 1078 52.3
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 1078 52.3
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 1078 52.6
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 1088 52.2
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 1078 52.3
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 1078 52.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1128.2 1078 52.3
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1127.5 1082 51.9
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1126.3 1075 52.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1125.9 1081 52.0
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1124.8 1078 52.6
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1124.0 1078 52.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1123.6 1057 53.7
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1123.2 1087 52.4
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1119.8 1108 50.6
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1118.2 1088 51.7
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1117.8 1069 52.5
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1116.7 1087 52.3
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1116.3 1081 51.2
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1115.9 1105 50.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1114.0 1088 52.6
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1111.7 1087 52.2
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1107.8 1086 51.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1105.1 1101 49.4
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1100.5 1168 49.1
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1100.5 1079 51.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1093.2 1168 49.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1087.8 1079 50.8
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1087.0 1152 48.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 6.6e-311 1070.8 1084 51.0
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 5.6e-310 1067.8 997 52.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 2.3e-308 1062.4 986 54.2
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 2.2e-306 1055.8 1098 50.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.4e-300 1035.8 1082 49.1
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.2e-293 1013.4 998 51.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 1.3e-290 1003.4 1000 51.2
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.3e-287 992.6 956 55.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.2e-265 919.1 839 55.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 6.7e-263 911.4 1075 45.3
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.8e-261 906.0 791 56.9
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 1.4e-241 840.5 687 59.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.7e-234 817.0 669 58.3
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 6.5e-234 815.1 717 56.1
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.1e-204 716.1 806 46.4
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 2.7e-203 713.4 755 47.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 8.0e-200 701.8 611 57.4
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 5.2e-183 646.0 630 53.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 7.1e-180 635.6 496 61.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 7.9e-155 552.4 635 45.2
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.9e-132 478.0 972 32.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.9e-131 472.6 427 58.1
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.5e-113 415.2 565 40.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.6e-113 414.5 300 64.0
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.2e-107 395.6 311 64.0
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.1e-78 298.5 385 41.8
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 9.6e-52 209.9 133 72.2
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.6e-43 182.6 240 41.2
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 4.5e-41 174.5 296 35.8
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.6e-38 166.0 205 42.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.7e-38 165.2 139 51.1
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 8.2e-27 127.1 157 42.7
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.8e-24 118.2 155 43.9
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 7.2e-23 114.0 73 72.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.8e-19 102.1 97 52.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 6.3e-19 100.9 115 44.3
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 5.9e-17 94.4 105 45.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.4e-10 73.2 49 69.4
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.0e-09 69.3 90 37.8
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 5.0e-08 64.7 67 44.8


User provided reference genes

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