Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 0.0e+00 2023.1 1062 100.0
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 5.1e-311 1071.2 1191 52.9
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 7.2e-302 1040.8 1187 51.9
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 4.5e-272 941.8 1131 49.5
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 3.8e-271 938.7 1148 49.4
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 8.6e-271 937.6 1148 49.4
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 5.8e-267 924.9 1158 48.3
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 3.9e-263 912.1 1149 47.8
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 6.6e-263 911.4 1163 47.5
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.1e-261 906.4 1141 47.2
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 2.0e-259 899.8 1141 47.2
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.6e-259 899.4 1141 47.0
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 7.5e-259 897.9 1146 46.7
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.3e-258 897.1 1141 47.2
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.2e-258 896.3 1142 47.3
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 2.9e-258 896.0 1139 47.3
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 4.9e-258 895.2 1142 46.8
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 4.1e-257 892.1 1152 46.9
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 4.1e-257 892.1 1155 47.5
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 5.4e-257 891.7 1152 46.9
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 2.7e-256 889.4 1141 46.1
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 4.6e-256 888.6 1161 46.4
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 7.8e-256 887.9 1152 46.7
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 7.8e-256 887.9 1164 47.3
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 3.0e-255 885.9 1160 46.4
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 3.0e-255 885.9 1148 47.9
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 3.9e-255 885.6 1129 47.3
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 3.3e-254 882.5 1154 45.9
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 3.6e-253 879.0 1136 45.9
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 4.7e-253 878.6 1157 46.2
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 1.8e-252 876.7 1134 47.4
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 3.1e-252 875.9 1155 46.1
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 3.1e-252 875.9 1133 47.2
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 4.0e-252 875.5 1099 47.2
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 5.2e-252 875.2 1149 45.8
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 7.5e-251 871.3 1155 45.0
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 9.9e-251 870.9 1125 46.0
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 3.7e-250 869.0 1178 46.1
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 3.2e-249 865.9 1096 45.3
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 4.1e-249 865.5 1153 45.4
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 7.1e-249 864.8 1152 45.3
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 9.2e-249 864.4 1159 46.2
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 9.2e-249 864.4 1159 46.2
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 1.2e-248 864.0 1142 45.9
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 1.6e-248 863.6 1154 45.3
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 1.6e-248 863.6 1077 46.4
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 2.1e-248 863.2 1158 44.6
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 2.3e-247 859.8 1151 45.8
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 2.3e-247 859.8 1162 45.0
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 6.6e-247 858.2 1158 45.3
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 1.9e-246 856.7 1157 45.2
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 2.5e-246 856.3 1157 44.5
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 7.3e-246 854.7 1098 46.5
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 7.3e-246 854.7 1154 45.1
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 9.5e-246 854.4 1135 44.7
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 9.5e-246 854.4 1149 45.5
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 1.2e-245 854.0 1153 44.3
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 2.1e-245 853.2 1135 44.6
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 2.1e-245 853.2 1148 45.3
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 2.8e-245 852.8 1132 45.8
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 4.7e-245 852.0 1126 45.3
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 4.7e-245 852.0 1135 44.6
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 6.2e-245 851.7 1135 44.6
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 6.2e-245 851.7 1139 45.2
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 8.1e-245 851.3 1117 45.8
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 1.1e-244 850.9 1135 44.6
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 1.4e-244 850.5 1132 45.1
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 1.4e-244 850.5 1132 45.2
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 1.4e-244 850.5 1132 45.1
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 1.4e-244 850.5 1157 44.6
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 1.8e-244 850.1 1127 45.3
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 3.1e-244 849.4 1139 44.4
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 3.1e-244 849.4 1155 43.9
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 3.1e-244 849.4 1149 44.2
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 4.0e-244 849.0 1147 45.3
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 4.0e-244 849.0 1148 44.5
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 5.2e-244 848.6 1144 44.5
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 8.9e-244 847.8 1144 45.9
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 8.9e-244 847.8 1152 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 1.5e-243 847.0 1186 45.1
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 4.4e-243 845.5 1083 46.9
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 4.4e-243 845.5 1150 44.7
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 5.8e-243 845.1 1154 44.5
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 1.3e-242 844.0 1146 44.2
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 2.2e-242 843.2 1154 43.8
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 2.2e-242 843.2 1147 44.7
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 2.9e-242 842.8 1152 44.9
SMO361G0456 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 3.8e-242 842.4 1072 48.7
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 1.9e-241 840.1 1164 44.7
SMO361G0185 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 1.9e-241 840.1 1072 48.6
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 2.4e-241 839.7 1128 46.3
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 2.4e-241 839.7 1128 46.3
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 4.2e-241 839.0 1157 44.3
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 1.2e-240 837.4 1133 45.3
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 2.7e-240 836.3 1154 44.2
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 3.5e-240 835.9 1151 44.4
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 6.0e-240 835.1 1152 44.5
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 2.3e-239 833.2 1145 43.9
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 3.0e-239 832.8 1094 46.0
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 5.1e-239 832.0 1091 46.6
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 5.1e-239 832.0 1153 43.5
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 1.9e-238 830.1 1154 44.5
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 2.5e-238 829.7 1093 45.8
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 3.3e-238 829.3 1150 45.1
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 3.3e-238 829.3 1100 45.8
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 4.3e-238 828.9 1158 44.3
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 5.3e-236 822.0 1154 43.2
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 5.8e-235 818.5 1153 43.7
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 5.8e-235 818.5 1158 44.3
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 4.9e-234 815.5 1113 44.2
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 1.4e-233 813.9 1155 44.8
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 1.9e-233 813.5 1148 42.8
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 3.2e-233 812.8 1152 43.7
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 5.4e-233 812.0 1145 44.5
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 2.1e-232 810.1 1156 43.1
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 2.7e-232 809.7 1154 43.8
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 3.5e-232 809.3 1155 43.6
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 1.9e-230 803.5 1074 45.7
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 2.5e-230 803.1 1076 45.4
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 2.5e-230 803.1 1141 44.0
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 5.6e-230 802.0 1158 42.8
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 5.6e-230 802.0 1153 43.6
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 1.6e-229 800.4 1150 44.3
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 1.4e-228 797.3 1147 42.4
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 4.0e-228 795.8 1144 44.6
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 5.3e-228 795.4 1147 42.9
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 2.9e-226 789.6 1092 44.2
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 2.1e-224 783.5 1113 42.8
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 2.7e-224 783.1 1156 43.2
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 2.3e-223 780.0 1101 43.9
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.8e-221 772.3 1136 44.5
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 1.8e-220 770.4 1073 43.1
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 2.4e-220 770.0 1149 44.1
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 1.5e-219 767.3 1109 42.7
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 7.6e-219 765.0 1150 42.3
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 1.0e-215 754.6 1131 43.0
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.0e-215 754.6 951 48.4
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 1.8e-215 753.8 1011 45.0
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 5.1e-215 752.3 1144 42.7
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 5.6e-214 748.8 1138 43.8
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 2.5e-209 733.4 1018 44.7
Zm00001eb206680 Zea mays HOM05D003560 ORTHO05D004500 7.9e-208 728.4 1146 41.4
Zm00001eb233940 Zea mays HOM05D003560 ORTHO05D004500 3.1e-204 716.5 1151 41.1
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 2.8e-197 693.3 1155 40.3
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 7.4e-190 668.7 1093 40.4
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 1.2e-184 651.4 784 48.6
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 1.5e-182 644.4 749 50.2
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 1.5e-174 617.8 875 44.6
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 5.9e-171 605.9 1201 35.8
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 1.0e-167 595.1 815 46.5
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 2.3e-167 594.0 858 44.8
CBR_g38482 Chara braunii HOM05D003560 ORTHO05D004500 9.5e-153 545.4 1338 32.7
CBR_g55388 Chara braunii HOM05D003560 ORTHO05D004500 8.9e-143 512.3 1360 31.2
Hma1.2p1_0222F.1_g093876 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.9e-133 480.7 840 40.0
Hma1.2p1_0222F.1_g093910 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.9e-133 480.7 840 40.0
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 1.7e-122 444.9 747 40.4
Actinidia24369 Actinidia chinensis HOM05D003560 ORTHO05D004500 1.3e-98 365.5 372 51.6
MCO10G226 Micromonas commoda HOM05D003560 ORTHO05D004500 4.8e-80 303.9 613 33.8
PRCOL_00000855 Prasinoderma coloniale HOM05D003560 ORTHO05D004500 2.3e-74 285.0 562 34.0
Cre16.g651350 Chlamydomonas reinhardtii HOM05D003560 ORTHO05D004500 5.1e-74 283.9 590 34.1
COL.COLO4_05032 Corchorus olitorius HOM05D003560 ORTHO05D004500 1.2e-70 272.7 306 47.1
Manes.14G113300 Manihot esculenta HOM05D003560 ORTHO05D004500 7.2e-68 263.5 306 46.7
Migut.K00302 Erythranthe guttata HOM05D003560 ORTHO05D004500 2.0e-54 218.8 761 25.9
vmacro06070 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 2.3e-45 188.7 289 42.2
Hma1.2p1_0222F.1_g093900 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 3.1e-34 151.8 272 37.9
Zm00001eb234440 Zea mays HOM05D003560 ORTHO05D004500 1.1e-26 126.7 150 48.7
GSVIVG01023678001 Vitis vinifera HOM05D003560 ORTHO05D004500 4.4e-25 121.3 116 52.6
Zm00001eb110220 Zea mays HOM05D003560 ORTHO05D004500 1.9e-20 105.9 141 44.7
Zm00001eb257740 Zea mays HOM05D003560 ORTHO05D004500 2.5e-20 105.5 140 45.0
TPR.G131 Trifolium pratense HOM05D003560 ORTHO05D004500 5.6e-20 104.4 224 39.3
Zm00001eb400070 Zea mays HOM05D003560 ORTHO05D004500 5.6e-20 104.4 104 56.7
RcHm_v2.0_Chr5g0033091 Rosa chinensis HOM05D003560 ORTHO05D004500 8.4e-16 90.5 74 63.5
BcaC01g01128 Brassica carinata HOM05D003560 ORTHO05D004500 4.1e-15 88.2 123 42.3
C03p39530 Brassica napus HOM05D003560 ORTHO05D021703 4.1e-15 88.2 104 51.0
C03p39520 Brassica napus HOM05D003560 ORTHO05D021703 2.7e-14 85.5 104 51.0
C04p25460 Brassica napus HOM05D003560 ORTHO05D021703 3.9e-13 81.6 104 49.0
BolC4t24064H Brassica oleracea HOM05D003560 ORTHO05D021703 3.9e-13 81.6 104 49.0
BcaC01g00594 Brassica carinata HOM05D003560 ORTHO05D021703 5.1e-13 81.3 104 49.0
BcaC02g10746 Brassica carinata HOM05D003560 ORTHO05D027224 8.6e-13 80.5 320 28.4
SEGI_20080 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 9.6e-12 77.0 177 35.0
Nn2g14361 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.5e-09 69.7 67 56.7
VMungo1127G1083 Vigna mungo HOM05D003560 ORTHO05D021703 4.4e-09 68.2 118 36.4
Lsat_1_v5_gn_4_130961 Lactuca sativa HOM05D003560 ORTHO05D232868 4.9e-08 64.7 123 33.3
Actinidia24368 Actinidia chinensis HOM05D003560 ORTHO05D004500 2.1e-06 59.3 118 35.6


User provided reference genes

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