Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 2.2e-39 165.2 86 100.0
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 2.7e-18 95.1 83 56.6
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.0e-17 93.2 83 57.8
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.0e-17 93.2 84 58.3
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.4e-17 92.8 86 57.0
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.8e-17 92.4 83 57.8
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.0e-17 91.7 83 57.8
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.0e-17 91.7 86 55.8
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 3.0e-17 91.7 83 59.0
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.0e-17 91.7 83 57.8
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 4.0e-17 91.3 83 57.8
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 4.0e-17 91.3 83 57.8
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 4.0e-17 91.3 83 57.8
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 4.0e-17 91.3 83 57.8
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 5.2e-17 90.9 83 55.4
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 5.2e-17 90.9 83 56.6
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 6.8e-17 90.5 86 54.7
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.8e-17 90.1 83 56.6
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 8.8e-17 90.1 86 54.7
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 8.8e-17 90.1 83 55.4
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.2e-16 89.7 86 53.5
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.5e-16 89.4 83 56.6
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.5e-16 89.4 83 56.6
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 1.5e-16 89.4 84 53.6
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.0e-16 89.0 83 55.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.0e-16 89.0 83 55.4
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.6e-16 88.6 84 54.8
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.6e-16 88.6 86 52.3
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 2.6e-16 88.6 83 55.4
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.4e-16 88.2 83 53.0
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.4e-16 87.8 83 55.4
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 5.7e-16 87.4 86 51.2
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 5.7e-16 87.4 84 54.8
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 5.7e-16 87.4 83 54.2
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 5.7e-16 87.4 83 54.2
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.7e-16 87.4 83 54.2
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.7e-16 87.4 83 54.2
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.7e-16 87.4 83 54.2
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.7e-16 87.4 83 55.4
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.7e-16 87.4 84 53.6
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 7.5e-16 87.0 83 53.0
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 7.5e-16 87.0 84 51.2
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 9.8e-16 86.7 83 54.2
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.3e-15 86.3 83 54.2
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-15 86.3 84 54.8
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.3e-15 86.3 86 53.5
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.3e-15 86.3 84 52.4
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-15 86.3 83 54.2
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.7e-15 85.9 86 54.7
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.7e-15 85.9 86 52.3
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.7e-15 85.9 86 51.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 2.2e-15 85.5 84 54.8
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 2.2e-15 85.5 84 54.8
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.2e-15 85.5 84 53.6
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.8e-15 85.1 86 53.5
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.8e-15 85.1 84 53.6
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.8e-15 85.1 84 53.6
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 2.8e-15 85.1 83 50.6
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.8e-15 85.1 83 53.0
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 2.8e-15 85.1 84 54.8
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.7e-15 84.7 86 52.3
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 3.7e-15 84.7 84 54.8
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 3.7e-15 84.7 84 54.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.7e-15 84.7 83 50.6
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 4.8e-15 84.3 82 51.2
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.8e-15 84.3 83 53.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 6.3e-15 84.0 83 53.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 6.3e-15 84.0 83 50.6
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 6.3e-15 84.0 86 53.5
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 6.3e-15 84.0 86 52.3
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 6.3e-15 84.0 83 50.6
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 8.3e-15 83.6 84 51.2
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 8.3e-15 83.6 86 52.3
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 8.3e-15 83.6 86 52.3
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 8.3e-15 83.6 86 52.3
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 8.3e-15 83.6 86 52.3
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 8.3e-15 83.6 86 52.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 8.3e-15 83.6 86 52.3
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 8.3e-15 83.6 83 48.2
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 8.3e-15 83.6 83 53.0
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 8.3e-15 83.6 85 47.1
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 8.3e-15 83.6 83 51.8
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.1e-14 83.2 83 53.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-14 83.2 84 51.2
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.4e-14 82.8 83 53.0
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.4e-14 82.8 78 53.8
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.8e-14 82.4 83 53.0
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.8e-14 82.4 83 47.0
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-14 82.4 84 53.6
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.8e-14 82.4 84 52.4
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.8e-14 82.4 80 55.0
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.8e-14 82.4 86 50.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.8e-14 82.4 83 48.2
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.4e-14 82.0 83 50.6
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 2.4e-14 82.0 83 48.2
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 2.4e-14 82.0 80 55.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.4e-14 82.0 83 53.0
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 3.1e-14 81.6 86 50.0
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 3.1e-14 81.6 86 51.2
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 3.1e-14 81.6 83 53.0
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 4.1e-14 81.3 86 51.2
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.1e-14 81.3 83 49.4
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 5.4e-14 80.9 86 47.7
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 5.4e-14 80.9 84 50.0
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 9.1e-14 80.1 86 50.0
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 9.1e-14 80.1 83 47.0
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 9.1e-14 80.1 83 51.8
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 9.1e-14 80.1 83 48.2
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.2e-13 79.7 79 50.6
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.2e-13 79.7 83 50.6
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.7e-13 78.6 86 50.0
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.5e-13 78.2 86 46.5
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.5e-13 78.2 84 51.2
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 3.5e-13 78.2 83 49.4
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 4.5e-13 77.8 86 51.2
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 4.5e-13 77.8 104 44.2
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 5.9e-13 77.4 84 44.0
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.9e-13 77.4 83 50.6
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 7.7e-13 77.0 80 50.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.3e-12 76.3 83 44.6
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 1.3e-12 76.3 84 51.2
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.7e-12 75.9 84 47.6
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 2.9e-12 75.1 96 43.8
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.5e-11 72.8 76 47.4
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.9e-11 72.4 84 48.8
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.9e-11 72.4 84 48.8
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.9e-11 72.4 75 49.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.5e-11 72.0 84 44.0
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 2.5e-11 72.0 84 47.6
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 4.2e-11 71.2 84 47.6
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 3.6e-10 68.2 86 46.5
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.7e-10 67.8 104 41.3
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.4e-09 66.2 58 58.6
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 4.0e-09 64.7 59 61.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 2.0e-08 62.4 60 53.3
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 9.8e-08 60.1 63 46.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 1.3e-07 59.7 58 53.4
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.3e-07 59.7 58 56.9
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 6.3e-07 57.4 58 51.7
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 8.3e-07 57.0 57 57.9
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.4e-06 55.5 57 50.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 2.4e-06 55.5 60 50.0
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.1e-06 54.7 70 47.1
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 9.2e-06 53.5 52 51.9


User provided reference genes

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