Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO298G0029 Selaginella moellendorffii HOM05D067860 ORTHO05D000202 4.5e-35 150.6 70 100.0
SMO169G0212 Selaginella moellendorffii HOM05D067860 ORTHO05D000202 3.7e-13 77.8 44 79.5
MD08G1125700 Malus domestica HOM05D000542 ORTHO05D000202 7.2e-09 63.5 70 42.9
MD15G1105500 Malus domestica HOM05D000542 ORTHO05D000202 7.2e-09 63.5 70 42.9
Gohir.D05G073625 Gossypium hirsutum HOM05D000542 ORTHO05D000202 9.4e-09 63.2 70 41.4
Gorai.009G074600 Gossypium raimondii HOM05D000542 ORTHO05D000202 9.4e-09 63.2 70 41.4
Manes.06G160500 Manihot esculenta HOM05D000542 ORTHO05D000202 9.4e-09 63.2 70 42.9
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 9.4e-09 63.2 74 40.5
Gohir.A05G070650 Gossypium hirsutum HOM05D000542 ORTHO05D000202 2.1e-08 62.0 70 41.4
Manes.06G160800 Manihot esculenta HOM05D000542 ORTHO05D000202 2.7e-08 61.6 70 41.4
Thecc.09G242400 Theobroma cacao HOM05D000542 ORTHO05D000202 2.7e-08 61.6 69 44.9
Aqoxy6G01077 Aquilegia oxysepala HOM05D000542 ORTHO05D000202 3.6e-08 61.2 70 37.1
PGSC0003DMG400027019 Solanum tuberosum HOM05D001500 ORTHO05D000202 3.6e-08 61.2 70 38.6
VMungo1309G1325 Vigna mungo HOM05D000542 ORTHO05D000202 3.6e-08 61.2 70 38.6
Manes.06G160750 Manihot esculenta HOM05D000542 ORTHO05D000202 4.7e-08 60.8 70 41.4
Manes.06G160932 Manihot esculenta HOM05D000542 ORTHO05D000202 4.7e-08 60.8 70 41.4
SMO184G0006 Selaginella moellendorffii HOM05D001500 ORTHO05D000202 4.7e-08 60.8 74 37.8
Sopen06g029530 Solanum pennellii HOM05D001500 ORTHO05D000202 6.1e-08 60.5 70 38.6
unitig_22.g6449 Utricularia gibba HOM05D001500 ORTHO05D000202 6.1e-08 60.5 71 40.8
COL.COLO4_36492 Corchorus olitorius HOM05D000542 ORTHO05D000202 8.0e-08 60.1 70 41.4
COL.COLO4_36495 Corchorus olitorius HOM05D000542 ORTHO05D000202 8.0e-08 60.1 70 35.7
unitig_22.g6443 Utricularia gibba HOM05D001500 ORTHO05D000202 8.0e-08 60.1 71 43.7
Eucgr.I01260 Eucalyptus grandis HOM05D000542 ORTHO05D000202 1.0e-07 59.7 70 35.7
Thecc.09G242600 Theobroma cacao HOM05D000542 ORTHO05D000202 1.0e-07 59.7 70 41.4
unitig_23.g29662 Utricularia gibba HOM05D001500 ORTHO05D000202 1.0e-07 59.7 72 41.7
arahy.Tifrunner.gnm1.ann1.M4EJC3 Arachis hypogaea HOM05D000542 ORTHO05D000202 1.4e-07 59.3 70 37.1
arahy.Tifrunner.gnm1.ann1.RL0B30 Arachis hypogaea HOM05D000542 ORTHO05D000202 1.4e-07 59.3 70 37.1
unitig_22.g6444 Utricularia gibba HOM05D001500 ORTHO05D000202 1.4e-07 59.3 71 39.4
COL.COLO4_04120 Corchorus olitorius HOM05D000542 ORTHO05D000202 1.8e-07 58.9 70 38.6
Manes.17G100000 Manihot esculenta HOM05D000542 ORTHO05D000202 1.8e-07 58.9 70 41.4
Nn5g27671 Nelumbo nucifera HOM05D000542 ORTHO05D000202 1.8e-07 58.9 70 41.4
Sabra09G0087700 Salix brachista HOM05D000542 ORTHO05D000202 1.8e-07 58.9 70 37.1
SEGI_12028 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 1.8e-07 58.9 72 38.9
SEGI_13214 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 1.8e-07 58.9 75 38.7
SEGI_37241 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 1.8e-07 58.9 70 37.1
CAN.G65.162 Capsicum annuum HOM05D001500 ORTHO05D000202 2.3e-07 58.5 70 35.7
Medtr3g109490 Medicago truncatula HOM05D000542 ORTHO05D000202 2.3e-07 58.5 70 37.1
SEGI_30414 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 2.3e-07 58.5 72 37.5
TWI75G0539 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 2.3e-07 58.5 70 37.1
unitig_22.g6441 Utricularia gibba HOM05D001500 ORTHO05D000202 2.3e-07 58.5 71 42.3
COL.COLO4_36493 Corchorus olitorius HOM05D000542 ORTHO05D000202 3.0e-07 58.2 70 37.1
Gohir.D13G221533 Gossypium hirsutum HOM05D000542 ORTHO05D000202 3.0e-07 58.2 70 38.6
Gorai.013G252700 Gossypium raimondii HOM05D000542 ORTHO05D000202 3.0e-07 58.2 70 38.6
Nn5g27662 Nelumbo nucifera HOM05D000542 ORTHO05D000202 3.0e-07 58.2 70 41.4
Sabra04G0081900 Salix brachista HOM05D000542 ORTHO05D000202 3.0e-07 58.2 70 41.4
DCAR_004246 Daucus carota HOM05D000542 ORTHO05D000202 4.0e-07 57.8 70 38.6
Manes.06G160100 Manihot esculenta HOM05D000542 ORTHO05D000202 4.0e-07 57.8 70 40.0
Manes.06G160201 Manihot esculenta HOM05D000542 ORTHO05D000202 4.0e-07 57.8 70 40.0
SEGI_00506 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 4.0e-07 57.8 75 37.3
SEGI_15221 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 4.0e-07 57.8 75 37.3
SEGI_15477 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 4.0e-07 57.8 70 35.7
unitig_22.g6440 Utricularia gibba HOM05D001500 ORTHO05D000202 4.0e-07 57.8 71 40.8
unitig_22.g6448 Utricularia gibba HOM05D001500 ORTHO05D000202 4.0e-07 57.8 71 40.8
unitig_23.g29664 Utricularia gibba HOM05D001500 ORTHO05D000202 4.0e-07 57.8 71 42.3
Dinv23537 Davidia involucrata HOM05D000542 ORTHO05D000202 5.2e-07 57.4 70 35.7
Prupe.1G475300 Prunus persica HOM05D000542 ORTHO05D000202 5.2e-07 57.4 70 40.0
CSS0026040 Camellia sinensis var. sinensis HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 34.3
Lj1g0018273 Lotus japonicus HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 37.1
Psat6g034000 Pisum sativum HOM05D000542 ORTHO05D000202 6.7e-07 57.0 72 36.1
Prupe.1G476500 Prunus persica HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 41.4
SEGI_17389 Sequoiadendron giganteum HOM05D001500 ORTHO05D000202 6.7e-07 57.0 70 37.1
Solyc08g068130.1 Solanum lycopersicum HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 37.1
Sopen08g022000 Solanum pennellii HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 37.1
PGSC0003DMG400042760 Solanum tuberosum HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 37.1
PGSC0003DMG400047074 Solanum tuberosum HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 37.1
TWI79G1639 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 38.6
VMungo1309G1230 Vigna mungo HOM05D000542 ORTHO05D000202 6.7e-07 57.0 70 37.1
CAN.G186.49 Capsicum annuum HOM05D000542 ORTHO05D000202 8.8e-07 56.6 70 38.6
DCAR_028993 Daucus carota HOM05D000542 ORTHO05D000202 8.8e-07 56.6 71 33.8
Gohir.A13G217851 Gossypium hirsutum HOM05D000542 ORTHO05D000202 8.8e-07 56.6 70 38.6
Prupe.1G477000 Prunus persica HOM05D000542 ORTHO05D000202 8.8e-07 56.6 70 41.4
COL.COLO4_04121 Corchorus olitorius HOM05D000542 ORTHO05D000202 1.2e-06 56.2 70 42.9
Thhalv10011703m.g Eutrema salsugineum HOM05D000542 ORTHO05D000202 1.2e-06 56.2 70 31.4
Glyma.07G176700 Glycine max HOM05D000542 ORTHO05D000202 1.2e-06 56.2 73 34.2
Gohir.D05G073600 Gossypium hirsutum HOM05D000542 ORTHO05D000202 1.2e-06 56.2 70 37.1
Gorai.009G074500 Gossypium raimondii HOM05D000542 ORTHO05D000202 1.2e-06 56.2 70 37.1
Peaxi162Scf00105g00313 Petunia axillaris HOM05D000542 ORTHO05D000202 1.2e-06 56.2 70 35.7
Phvul.009G024700 Phaseolus vulgaris HOM05D000542 ORTHO05D000202 1.2e-06 56.2 70 38.6
ClCG02G005150 Citrullus lanatus HOM05D000542 ORTHO05D000202 1.5e-06 55.8 73 37.0
Lsat_1_v5_gn_6_11160 Lactuca sativa HOM05D000542 ORTHO05D000202 1.5e-06 55.8 70 40.0
Nn5g27672 Nelumbo nucifera HOM05D000542 ORTHO05D000202 1.5e-06 55.8 70 41.4
Prupe.1G475400 Prunus persica HOM05D000542 ORTHO05D000202 1.5e-06 55.8 70 40.0
SEGI_23182 Sequoiadendron giganteum HOM05D000542 ORTHO05D000202 1.5e-06 55.8 75 36.0
SEGI_33434 Sequoiadendron giganteum HOM05D001500 ORTHO05D000202 1.5e-06 55.8 70 37.1
AUR62023033 Chenopodium quinoa HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 38.6
MELO3C012542.2 Cucumis melo HOM05D000542 ORTHO05D000202 2.0e-06 55.5 73 37.0
CsaV3_7G023440 Cucumis sativus L. HOM05D000542 ORTHO05D000202 2.0e-06 55.5 73 37.0
DCAR_004505 Daucus carota HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 38.6
DCAR_004509 Daucus carota HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 40.0
Gohir.A05G070600 Gossypium hirsutum HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 37.1
Potri.004G136000 Populus trichocarpa HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 42.9
Potri.004G136900 Populus trichocarpa HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 42.9
Prupe.1G475100 Prunus persica HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 40.0
Prupe.1G475800 Prunus persica HOM05D000542 ORTHO05D000202 2.0e-06 55.5 70 40.0
Haze_02371 Corylus avellana HOM05D000542 ORTHO05D000202 2.6e-06 55.1 70 32.9
Potri.004G153100 Populus trichocarpa HOM05D000542 ORTHO05D000202 2.6e-06 55.1 70 34.3
Potri.009G114600 Populus trichocarpa HOM05D000542 ORTHO05D000202 2.6e-06 55.1 70 34.3
TWI79G0593 Tripterygium wilfordii HOM05D000542 ORTHO05D000202 2.6e-06 55.1 70 37.1
Cc08_g08450 Coffea canephora HOM05D000542 ORTHO05D000202 3.3e-06 54.7 70 40.0
COL.COLO4_36496 Corchorus olitorius HOM05D000542 ORTHO05D000202 3.3e-06 54.7 70 34.3
HanXRQChr03g0082391 Helianthus annuus HOM05D000542 ORTHO05D000202 3.3e-06 54.7 70 38.6
Prupe.1G477400 Prunus persica HOM05D000542 ORTHO05D000202 3.3e-06 54.7 70 40.0
Sabra09G0087800 Salix brachista HOM05D000542 ORTHO05D000202 3.3e-06 54.7 70 34.3
Atru.chr5.2992 Acer truncatum HOM05D000542 ORTHO05D000202 4.4e-06 54.3 70 35.7
Cc00_g29410 Coffea canephora HOM05D000542 ORTHO05D000202 4.4e-06 54.3 70 32.9
Duzib129G0001 Durio zibethinus HOM05D000542 ORTHO05D000202 4.4e-06 54.3 70 35.7
HanXRQChr02g0048371 Helianthus annuus HOM05D000542 ORTHO05D000202 4.4e-06 54.3 70 38.6
Medtr1g008500 Medicago truncatula HOM05D000542 ORTHO05D000202 4.4e-06 54.3 72 37.5
unitig_8.g3158 Utricularia gibba HOM05D001500 ORTHO05D000202 4.4e-06 54.3 71 36.6
CiPaw.05G063300 Carya illinoinensis HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 32.9
FAN24G0974 Fragaria x ananassa HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 35.7
FAN24G1871 Fragaria x ananassa HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 35.7
FAN24G2825 Fragaria x ananassa HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 35.7
Lalb_Chr24g0402641 Lupinus albus HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 35.7
MD10G1078000 Malus domestica HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 32.9
Psat6g033960 Pisum sativum HOM05D000542 ORTHO05D000202 5.7e-06 53.9 72 37.5
Prupe.1G476200 Prunus persica HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 40.0
Prupe.1G477200 Prunus persica HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 40.0
TPR.G11980 Trifolium pratense HOM05D000542 ORTHO05D000202 5.7e-06 53.9 72 37.5
TAR628G1303 Trochodendron aralioides HOM05D000542 ORTHO05D000202 5.7e-06 53.9 70 31.4
Aa31LG10G4630 Aethionema arabicum HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 34.3
CiPaw.06G136600 Carya illinoinensis HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 32.9
AUR62006863 Chenopodium quinoa HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 40.0
AUR62009353 Chenopodium quinoa HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 37.1
AUR62016713 Chenopodium quinoa HOM05D000542 ORTHO05D000202 7.5e-06 53.5 75 37.3
AUR62044620 Chenopodium quinoa HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 37.1
DCAR_000738 Daucus carota HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 38.6
Migut.N03082 Erythranthe guttata HOM05D001500 ORTHO05D000202 7.5e-06 53.5 72 33.3
Hma1.2p1_0003F.1_g003730 Hydrangea macrophylla HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 38.6
Oeu027036.1 Olea europaea HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 34.3
Prupe.1G477800 Prunus persica HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 40.0
PGR044G1623 Punica granatum HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 37.1
RcHm_v2.0_Chr6g0263891 Rosa chinensis HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 34.3
Hund00281 Selenicereus undatus HOM05D000542 ORTHO05D000202 7.5e-06 53.5 74 37.8
Thecc.09G242900 Theobroma cacao HOM05D000542 ORTHO05D000202 7.5e-06 53.5 70 35.7
Aa31LG10G4640 Aethionema arabicum HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 32.9
EL10Ac2g04088 Beta vulgaris HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 38.6
EL10Ac4g07581 Beta vulgaris HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 35.7
Cfa005017 Carpinus fangiana HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 31.4
AUR62005310 Chenopodium quinoa HOM05D000542 ORTHO05D000202 9.7e-06 53.1 71 33.8
COL.COLO4_36491 Corchorus olitorius HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 35.7
ECA233G1799 Erigeron canadensis HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 37.1
Migut.N03081 Erythranthe guttata HOM05D001500 ORTHO05D000202 9.7e-06 53.1 72 33.3
Eucgr.B03341 Eucalyptus grandis HOM05D001500 ORTHO05D000202 9.7e-06 53.1 71 39.4
Lsat_1_v5_gn_9_90481 Lactuca sativa HOM05D000542 ORTHO05D000202 9.7e-06 53.1 73 34.2
Lj9P368T54 Lonicera japonica HOM05D000542 ORTHO05D000202 9.7e-06 53.1 73 35.6
Phvul.009G180600 Phaseolus vulgaris HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 35.7
Potri.009G114300 Populus trichocarpa HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 34.3
SalBow4G2992 Salvia bowleyana HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 37.1
TPR.G12105 Trifolium pratense HOM05D000542 ORTHO05D000202 9.7e-06 53.1 72 37.5
TPR.G12113 Trifolium pratense HOM05D000542 ORTHO05D000202 9.7e-06 53.1 70 37.1
GSVIVG01035686001 Vitis vinifera HOM05D000542 ORTHO05D000202 9.7e-06 53.1 69 34.8


User provided reference genes

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