Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO297G0022 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 6.0e-216 753.8 362 100.0
SMO266G0037 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 2.1e-96 356.7 278 69.8
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 3.5e-91 339.3 279 65.9
Migut.J01174 Erythranthe guttata HOM05D005850 ORTHO05D007405 1.2e-51 208.0 301 39.5
Thecc.09G114700 Theobroma cacao HOM05D005850 ORTHO05D007405 3.6e-51 206.5 301 42.5
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 4.7e-51 206.1 303 40.9
MSTRG.19610 Avicennia marina HOM05D005850 ORTHO05D007405 6.1e-51 205.7 300 40.7
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 1.4e-50 204.5 302 40.4
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 3.9e-50 203.0 307 38.1
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 5.1e-50 202.6 302 39.7
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 1.1e-49 201.4 296 39.9
unitig_22.g6630 Utricularia gibba HOM05D005850 ORTHO05D007405 2.0e-49 200.7 275 41.1
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 2.6e-49 200.3 301 42.2
Cc06_g09340 Coffea canephora HOM05D005850 ORTHO05D007405 5.7e-49 199.1 301 38.5
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.7e-49 199.1 305 39.3
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.7e-49 199.1 305 39.3
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 7.4e-49 198.7 305 38.7
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 9.7e-49 198.4 305 38.7
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 9.7e-49 198.4 303 38.6
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 9.7e-49 198.4 298 39.6
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 1.3e-48 198.0 301 38.9
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 1.3e-48 198.0 305 37.7
HanXRQChr12g0355831 Helianthus annuus HOM05D005850 ORTHO05D007405 1.7e-48 197.6 303 38.0
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 2.2e-48 197.2 303 38.3
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 2.8e-48 196.8 305 38.4
Nitab4.5_0010299g0010 Nicotiana tabacum HOM05D005850 ORTHO05D007405 2.8e-48 196.8 302 37.4
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 4.8e-48 196.1 301 37.9
Gohir.D06G059100 Gossypium hirsutum HOM05D005850 ORTHO05D007405 4.8e-48 196.1 301 41.5
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 4.8e-48 196.1 276 40.9
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 8.2e-48 195.3 269 42.0
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 1.1e-47 194.9 303 38.0
Cfa003291 Carpinus fangiana HOM05D005850 ORTHO05D007405 1.4e-47 194.5 303 39.6
MELO3C004544.2 Cucumis melo HOM05D005850 ORTHO05D007405 1.8e-47 194.1 305 37.4
VMungo1127G0399 Vigna mungo HOM05D005850 ORTHO05D007405 1.8e-47 194.1 303 38.9
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.4e-47 193.7 301 37.5
Gorai.010G068900 Gossypium raimondii HOM05D005850 ORTHO05D007405 2.4e-47 193.7 272 43.8
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 2.4e-47 193.7 303 38.9
QL02p086096 Quercus lobata HOM05D005850 ORTHO05D007405 2.4e-47 193.7 302 39.7
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 3.1e-47 193.4 273 41.0
Nitab4.5_0004979g0100 Nicotiana tabacum HOM05D005850 ORTHO05D007405 3.1e-47 193.4 302 37.1
Phvul.011G012400 Phaseolus vulgaris HOM05D005850 ORTHO05D007405 3.1e-47 193.4 303 38.3
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 3.1e-47 193.4 303 38.0
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 4.1e-47 193.0 301 38.5
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 5.3e-47 192.6 301 36.9
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 5.3e-47 192.6 301 36.9
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 5.3e-47 192.6 273 41.0
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 6.9e-47 192.2 297 37.7
Sopen04g019720 Solanum pennellii HOM05D005850 ORTHO05D007405 6.9e-47 192.2 301 37.9
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 9.1e-47 191.8 299 37.5
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 1.2e-46 191.4 305 39.0
COL.COLO4_34934 Corchorus olitorius HOM05D005850 ORTHO05D007405 1.5e-46 191.0 298 40.3
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 3.4e-46 189.9 301 36.2
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 3.4e-46 189.9 301 37.9
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 4.5e-46 189.5 298 37.2
Pp3c8_16220 Physcomitrium patens HOM05D005850 ORTHO05D007405 4.5e-46 189.5 232 44.8
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 4.5e-46 189.5 301 38.2
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 4.5e-46 189.5 301 38.9
arahy.Tifrunner.gnm1.ann1.JQ4W8U Arachis hypogaea HOM05D005850 ORTHO05D007405 1.0e-45 188.3 321 36.4
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 1.0e-45 188.3 301 36.5
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 1.3e-45 188.0 302 39.1
Ciclev10008544m.g Citrus clementina HOM05D005850 ORTHO05D007405 1.7e-45 187.6 305 38.0
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 2.9e-45 186.8 270 40.4
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 3.8e-45 186.4 286 37.8
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 3.8e-45 186.4 298 36.9
ATR0037G042 Amborella trichopoda HOM05D005850 ORTHO05D007405 5.0e-45 186.0 302 36.1
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 5.0e-45 186.0 301 35.9
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 6.5e-45 185.7 301 37.2
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 1.1e-44 184.9 301 35.2
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 3.2e-44 183.3 301 35.5
vmacro20668 Vaccinium macrocarpon HOM05D005850 ORTHO05D007405 3.2e-44 183.3 342 34.8
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 4.2e-44 183.0 300 36.0
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 4.2e-44 183.0 301 35.5
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 4.2e-44 183.0 301 35.5
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 4.2e-44 183.0 301 35.5
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 7.2e-44 182.2 301 35.2
Lsat_1_v5_gn_5_100240 Lactuca sativa HOM05D005850 ORTHO05D007405 1.2e-43 181.4 317 35.6
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 1.2e-43 181.4 298 35.9
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 1.6e-43 181.0 302 37.1
arahy.Tifrunner.gnm1.ann1.2WTJ41 Arachis hypogaea HOM05D005850 ORTHO05D007405 2.1e-43 180.6 329 35.6
AT4G13400 Arabidopsis thaliana HOM05D005850 ORTHO05D007405 4.7e-43 179.5 276 38.0
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 1.8e-42 177.6 302 34.8
Mapoly0029s0010 Marchantia polymorpha HOM05D005850 ORTHO05D007405 3.0e-42 176.8 298 38.6
AUR62011029 Chenopodium quinoa HOM05D005850 ORTHO05D007405 3.9e-42 176.4 265 38.1
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 3.9e-42 176.4 233 41.6
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 5.2e-42 176.0 288 37.2
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 3.3e-41 173.3 287 37.3
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 9.7e-41 171.8 309 36.2
Duzib168G1614 Durio zibethinus HOM05D005850 ORTHO05D007405 2.8e-40 170.2 269 39.4
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 2.8e-40 170.2 203 45.3
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 6.3e-40 169.1 299 36.1
Ca_14665_v3 Cicer arietinum L. HOM05D005850 ORTHO05D007405 1.1e-39 168.3 247 39.7
TWI32G0506 Tripterygium wilfordii HOM05D005850 ORTHO05D007405 1.8e-39 167.5 298 36.2
Sc07g0007400 Simmondsia chinensis HOM05D005850 ORTHO05D007405 7.7e-38 162.2 248 38.7
TAR636G0790 Trochodendron aralioides HOM05D005850 ORTHO05D007405 2.2e-37 160.6 250 39.2
HPP92_003437 Vanilla planifolia HOM05D005850 ORTHO05D007405 4.7e-35 152.9 271 37.3
Ah.14g081400 Amaranthus hybridus HOM05D005850 ORTHO05D007405 8.8e-34 148.7 264 34.5
MBI01_g03372_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 1.5e-28 131.3 192 42.2
Cre02.g104100 Chlamydomonas reinhardtii HOM05D005850 ORTHO05D007405 2.1e-27 127.5 261 34.5
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 2.7e-27 127.1 195 37.4
MD02G1050500 Malus domestica HOM05D005850 ORTHO05D007405 5.7e-25 119.4 153 42.5
Rhsim01G0091700 Rhododendron simsii HOM05D005850 ORTHO05D007405 1.7e-24 117.9 243 34.2
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 2.3e-21 107.5 63 82.5
AagrBONN_evm.TU.Sc2ySwM_344.854 Anthoceros agrestis HOM05D005850 ORTHO05D007405 1.1e-20 105.1 146 43.2
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 7.2e-20 102.4 407 25.6
Solyc04g049620.2 Solanum lycopersicum HOM05D005850 ORTHO05D007405 6.1e-19 99.4 110 43.6
Hund09180 Selenicereus undatus HOM05D005850 ORTHO05D007405 8.0e-19 99.0 110 45.5
SEGI_17149 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 2.3e-18 97.4 91 50.5
AUR62033402 Chenopodium quinoa HOM05D005850 ORTHO05D007405 5.2e-18 96.3 110 42.7
MD00G1220200 Malus domestica HOM05D005850 ORTHO05D007405 4.4e-17 93.2 121 40.5
Haze_25681 Corylus avellana HOM05D002586 ORTHO05D007521 1.7e-16 91.3 151 39.7
Cpa.g.sc23.140 Carica papaya HOM05D005850 ORTHO05D007405 4.9e-16 89.7 120 41.7
ClCG11G002620 Citrullus lanatus HOM05D005850 ORTHO05D007405 8.3e-16 89.0 110 41.8
CARHR218970 Cardamine hirsuta HOM05D005850 ORTHO05D007405 1.1e-15 88.6 138 37.0
Hund09181 Selenicereus undatus HOM05D005850 ORTHO05D007405 5.4e-15 86.3 120 37.5
MD02G1053400 Malus domestica HOM05D005850 ORTHO05D007405 7.0e-15 85.9 97 45.4
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 3.5e-14 83.6 165 31.5
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 4.5e-14 83.2 233 27.5
AUR62033401 Chenopodium quinoa HOM05D005850 ORTHO05D007405 8.6e-13 79.0 132 33.3
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 3.6e-11 73.6 170 28.8
MD02G1055000 Malus domestica HOM05D005850 ORTHO05D007405 8.0e-11 72.4 108 38.9
Lj7E642T0 Lonicera japonica HOM05D005850 ORTHO05D007405 1.4e-10 71.6 60 51.7
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 1.8e-10 71.2 145 29.7
MD02G1051000 Malus domestica HOM05D005850 ORTHO05D007405 2.3e-10 70.9 53 54.7
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 1.2e-09 68.6 249 24.5
MD02G1052000 Malus domestica HOM05D005850 ORTHO05D007405 4.4e-09 66.6 110 36.4
FAN12G1654 Fragaria x ananassa HOM05D005850 ORTHO05D007405 7.5e-09 65.9 131 35.9
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 9.8e-09 65.5 323 23.8
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 1.7e-08 64.7 234 24.4
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 1.7e-08 64.7 234 24.4
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 2.2e-08 64.3 275 24.0
SEGI_15274 Sequoiadendron giganteum HOM05D005850 ORTHO05D007405 3.7e-08 63.5 44 63.6
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 3.7e-08 63.5 292 23.3
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 6.4e-08 62.8 194 24.2
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 1.1e-07 62.0 190 23.7
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 3.2e-07 60.5 190 23.7
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 5.4e-07 59.7 228 22.4
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 7.0e-07 59.3 210 23.8
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 1.2e-06 58.5 254 21.7


User provided reference genes

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