Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 0.0e+00 1817.4 897 100.0
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 0.0e+00 1317.0 827 80.2
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.1e-69 269.2 609 31.0
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 3.5e-63 247.7 803 28.0
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 1.6e-52 212.2 589 28.2
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.8e-40 172.2 415 32.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 4.3e-37 161.0 780 25.3
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 8.0e-36 156.8 686 24.8
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 7.5e-34 150.2 795 24.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-33 149.1 478 24.7
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 6.4e-33 147.1 726 23.8
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 5.9e-31 140.6 578 24.9
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 7.8e-31 140.2 561 24.8
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 3.9e-30 137.9 598 25.1
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 8.6e-30 136.7 570 26.8
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 2.5e-29 135.2 676 23.2
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 7.3e-29 133.7 562 23.8
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 7.3e-29 133.7 405 26.4
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 1.6e-28 132.5 743 22.2
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.1e-28 132.1 690 23.6
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.1e-28 132.1 705 23.3
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.1e-28 132.1 479 25.9
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.8e-28 131.7 555 23.4
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.8e-28 131.7 569 24.1
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.0e-27 129.8 670 24.0
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.0e-27 129.8 670 24.0
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.0e-27 129.8 687 25.2
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.4e-27 129.4 503 25.0
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.4e-27 129.4 667 23.7
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.8e-27 129.0 654 24.0
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.1e-27 128.3 567 23.5
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 4.0e-27 127.9 763 24.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.0e-27 127.9 484 25.6
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 5.2e-27 127.5 593 25.5
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 5.2e-27 127.5 571 24.2
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 5.2e-27 127.5 468 26.5
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 6.8e-27 127.1 601 25.0
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 8.9e-27 126.7 811 23.6
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.5e-26 125.9 486 24.5
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 2.6e-26 125.2 548 23.7
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 7.5e-26 123.6 610 23.6
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.3e-25 122.9 651 25.2
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 2.2e-25 122.1 769 23.7
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.9e-25 121.7 365 24.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.9e-25 121.7 768 23.7
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.9e-25 121.7 749 23.6
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.7e-25 121.3 592 22.6
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 3.7e-25 121.3 555 25.6
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 4.9e-25 120.9 480 25.8
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 4.9e-25 120.9 553 22.8
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 8.3e-25 120.2 701 22.8
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 1.9e-24 119.0 570 24.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.9e-24 119.0 336 27.1
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 3.2e-24 118.2 472 23.7
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 5.4e-24 117.5 499 23.6
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 9.2e-24 116.7 593 24.1
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.6e-23 115.9 374 25.7
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 2.7e-23 115.2 360 28.1
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.8e-23 113.6 412 27.2
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 7.8e-23 113.6 499 23.4
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.0e-22 113.2 260 30.8
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 2.3e-22 112.1 602 23.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 3.0e-22 111.7 793 22.8
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.0e-22 111.7 585 23.1
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 3.0e-22 111.7 376 26.3
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 5.0e-22 110.9 750 23.1
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 8.6e-22 110.2 389 25.4
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.9e-21 109.0 583 23.2
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 1.9e-21 109.0 512 24.4
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.3e-21 108.2 262 28.6
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 4.3e-21 107.8 578 23.0
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.3e-21 107.8 455 25.5
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 7.3e-21 107.1 673 25.0
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.6e-20 105.9 734 23.4
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.6e-20 105.9 488 22.1
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.8e-20 105.1 392 25.8
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 3.6e-20 104.8 397 23.9
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.7e-20 104.4 555 21.8
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 8.1e-20 103.6 561 23.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.1e-19 103.2 447 23.7
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.8e-19 102.4 420 24.3
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 3.1e-19 101.7 554 23.1
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.5e-18 99.4 428 22.9
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.2e-17 95.5 391 23.5
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.9e-17 95.1 546 23.1
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.9e-17 94.4 177 31.6
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 4.9e-17 94.4 338 25.4
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 6.4e-17 94.0 395 23.8
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 4.1e-16 91.3 360 23.1
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.2e-15 89.7 261 24.9
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.6e-15 89.4 543 21.7
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 2.1e-15 89.0 581 22.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.6e-15 87.8 378 20.9
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 3.9e-14 84.7 206 28.6
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 4.7e-12 77.8 193 26.9
SEGI_26180 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.2e-11 74.3 112 38.4
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 8.9e-11 73.6 484 21.1
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.7e-09 69.3 437 22.0
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.9e-09 68.6 185 27.0
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.0e-06 60.1 162 22.8
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.0e-06 60.1 162 22.8
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 3.9e-06 58.2 198 28.8


User provided reference genes

Program Settings