Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 7.9e-82 307.0 147 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 5.1e-73 277.7 146 89.7
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 6.7e-73 277.3 146 87.7
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 4.3e-72 274.6 146 88.4
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 5.6e-72 274.2 146 89.0
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.3e-71 273.1 146 87.7
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.6e-71 272.7 146 87.7
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.6e-71 272.7 146 87.7
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.6e-71 272.7 146 86.3
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 2.1e-71 272.3 146 87.7
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.1e-71 272.3 146 87.0
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 2.1e-71 272.3 146 87.0
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.1e-71 272.3 147 87.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.1e-71 272.3 147 87.1
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.1e-71 272.3 147 87.1
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.1e-71 272.3 146 87.7
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.1e-71 272.3 146 87.7
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.1e-71 272.3 146 87.7
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.8e-71 271.9 146 87.0
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.7e-71 271.6 146 86.3
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.7e-71 271.6 146 87.0
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 3.7e-71 271.6 146 87.7
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.7e-71 271.6 146 87.7
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 3.7e-71 271.6 146 87.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 4.8e-71 271.2 146 87.0
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.8e-71 271.2 146 86.3
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 4.8e-71 271.2 146 87.0
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 4.8e-71 271.2 146 87.0
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 4.8e-71 271.2 146 86.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.8e-71 271.2 146 87.0
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 6.2e-71 270.8 146 86.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 6.2e-71 270.8 146 86.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 6.2e-71 270.8 146 86.3
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 6.2e-71 270.8 146 86.3
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 6.2e-71 270.8 146 87.0
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 6.2e-71 270.8 146 87.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 8.2e-71 270.4 146 85.6
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.2e-71 270.4 146 87.0
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 8.2e-71 270.4 146 85.6
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 8.2e-71 270.4 146 87.0
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 8.2e-71 270.4 146 87.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.1e-70 270.0 147 86.4
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.1e-70 270.0 146 86.3
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.1e-70 270.0 146 86.3
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-70 270.0 146 86.3
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 87.0
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 86.3
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 86.3
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 86.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 86.3
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 86.3
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.4e-70 269.6 146 86.3
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.8e-70 269.2 146 85.6
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.8e-70 269.2 146 85.6
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.8e-70 269.2 146 85.6
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.8e-70 269.2 146 86.3
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.4e-70 268.9 143 88.1
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.4e-70 268.9 146 86.3
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.4e-70 268.9 146 85.6
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 2.4e-70 268.9 146 87.0
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.4e-70 268.9 146 86.3
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 3.1e-70 268.5 146 86.3
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.0e-70 268.1 146 86.3
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.0e-70 268.1 146 86.3
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 4.0e-70 268.1 146 86.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 4.0e-70 268.1 143 88.1
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 4.0e-70 268.1 146 86.3
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 4.0e-70 268.1 146 85.6
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 5.3e-70 267.7 146 84.9
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 5.3e-70 267.7 143 86.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.3e-70 267.7 146 85.6
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 5.3e-70 267.7 146 86.3
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 6.9e-70 267.3 146 84.9
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 6.9e-70 267.3 146 84.9
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 6.9e-70 267.3 146 86.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.9e-70 267.3 146 86.3
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 6.9e-70 267.3 146 84.9
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 6.9e-70 267.3 146 84.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 9.0e-70 266.9 146 86.3
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 9.0e-70 266.9 145 85.5
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 9.0e-70 266.9 146 85.6
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-69 266.5 146 85.6
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.2e-69 266.5 146 85.6
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.2e-69 266.5 146 85.6
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.2e-69 266.5 146 85.6
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.2e-69 266.5 147 84.4
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.2e-69 266.5 146 86.3
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.2e-69 266.5 146 84.9
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 84.2
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 85.6
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.5e-69 266.2 146 85.6
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.6e-69 265.4 146 85.6
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 3.4e-69 265.0 146 84.9
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.4e-69 265.0 146 84.2
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 4.5e-69 264.6 146 84.2
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 84.2
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 84.2
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 84.2
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 84.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 84.2
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 84.2
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 5.8e-69 264.2 146 86.3
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.0e-68 263.5 146 84.9
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.0e-68 263.5 146 84.9
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.0e-68 263.5 146 83.6
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 1.0e-68 263.5 140 88.6
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.3e-68 263.1 145 84.8
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 6.5e-68 260.8 146 83.6
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.4e-67 259.6 136 89.7
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.9e-67 259.2 146 85.6
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.9e-67 259.2 146 85.6
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.9e-67 259.2 146 85.6
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.5e-67 258.8 146 83.6
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.2e-67 258.1 146 84.9
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 7.1e-67 257.3 146 84.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.0e-66 254.2 135 88.9
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.0e-66 254.2 135 88.9
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.0e-66 254.2 135 88.9
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 1.0e-65 253.4 130 92.3
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-65 253.1 135 88.1
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.0e-65 251.9 136 87.5
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.1e-62 243.4 146 80.1
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.1e-62 243.4 146 80.1
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.5e-61 239.6 146 78.1
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.8e-60 235.0 121 91.7
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.0e-60 234.6 120 92.5
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.8e-57 226.1 140 76.4
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.3e-57 225.7 115 91.3
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 5.1e-57 224.6 150 74.7
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.5e-56 223.0 141 75.9
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 1.7e-55 219.5 137 75.2
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 3.1e-54 215.3 146 71.2
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 5.1e-49 198.0 145 66.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.8e-41 170.6 147 59.9
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 9.7e-40 167.2 92 82.6
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.5e-37 158.7 146 59.6
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.7e-31 138.7 74 89.2
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.1e-30 135.6 146 51.4
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.5e-11 73.6 45 75.6
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.3e-11 72.4 42 81.0
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 3.3e-11 72.4 45 77.8
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 1.0e-09 67.4 72 55.6


User provided reference genes

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