Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO275G0062 Selaginella moellendorffii HOM05D003255 ORTHO05D003705 1.2e-189 666.4 332 100.0
SEGI_06106 Sequoiadendron giganteum HOM05D003255 ORTHO05D003705 4.8e-18 96.3 285 27.0
Mapoly0135s0022 Marchantia polymorpha HOM05D003255 ORTHO05D003705 5.3e-17 92.8 288 27.4
Ciclev10020539m.g Citrus clementina HOM05D003255 ORTHO05D003705 3.4e-16 90.1 279 26.2
Lalb_Chr06g0173971 Lupinus albus HOM05D003255 ORTHO05D003705 1.4e-14 84.7 280 26.4
TPR.G34627 Trifolium pratense HOM05D003255 ORTHO05D003705 1.9e-14 84.3 280 26.4
AagrBONN_evm.TU.Sc2ySwM_368.2197 Anthoceros agrestis HOM05D003255 ORTHO05D003705 2.4e-14 84.0 196 32.1
VMungo0464G0063 Vigna mungo HOM05D003255 ORTHO05D003705 2.4e-14 84.0 282 25.9
Psat0s2522g0120 Pisum sativum HOM05D003255 ORTHO05D003705 4.2e-14 83.2 283 25.4
Eucgr.K01496 Eucalyptus grandis HOM05D003255 ORTHO05D003705 5.4e-14 82.8 288 27.1
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 9.3e-14 82.0 276 29.7
Lj2C357T24 Lonicera japonica HOM05D003255 ORTHO05D003705 1.6e-13 81.3 293 25.3
Duzib128G0833 Durio zibethinus HOM05D003255 ORTHO05D003705 2.7e-13 80.5 285 25.6
CANSAT56G4486 Cannabis sativa HOM05D003255 ORTHO05D003705 4.6e-13 79.7 286 25.2
Hma1.2p1_0376F.1_g139160 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 4.6e-13 79.7 290 27.2
Nn7g35823 Nelumbo nucifera HOM05D003255 ORTHO05D003705 4.6e-13 79.7 261 28.4
Glyma.16G153000 Glycine max HOM05D003255 ORTHO05D003705 6.0e-13 79.3 298 25.8
Dinv14583 Davidia involucrata HOM05D003255 ORTHO05D003705 1.0e-12 78.6 287 25.4
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 1.0e-12 78.6 336 24.1
Zm00001eb057170 Zea mays HOM05D003255 ORTHO05D003705 1.0e-12 78.6 308 25.6
THA.LOC104805764 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.3e-12 78.2 283 26.5
THA.LOC104807097 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 1.3e-12 78.2 283 26.5
TAR623G0562 Trochodendron aralioides HOM05D003255 ORTHO05D003705 1.8e-12 77.8 287 27.5
Ca_21767_v3 Cicer arietinum L. HOM05D000813 ORTHO05D004282 2.3e-12 77.4 284 25.7
Gohir.D11G268800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 2.3e-12 77.4 290 26.2
CDE02G4790 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 5.1e-12 76.3 275 29.1
Medtr6g032880 Medicago truncatula HOM05D003255 ORTHO05D003705 5.1e-12 76.3 280 24.3
PGSC0003DMG400008640 Solanum tuberosum HOM05D003255 ORTHO05D003705 5.1e-12 76.3 303 26.4
THA.LOC104816712 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 5.1e-12 76.3 281 26.3
Gorai.007G288600 Gossypium raimondii HOM05D003255 ORTHO05D003705 6.7e-12 75.9 290 25.9
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 8.7e-12 75.5 294 22.8
Lj2g0018565 Lotus japonicus HOM05D003255 ORTHO05D003705 8.7e-12 75.5 307 25.7
Thecc.05G293800 Theobroma cacao HOM05D003255 ORTHO05D003705 8.7e-12 75.5 302 24.2
Ah.13g075320 Amaranthus hybridus HOM05D003255 ORTHO05D003705 1.1e-11 75.1 280 25.0
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 1.1e-11 75.1 288 25.7
Gohir.A11G258700 Gossypium hirsutum HOM05D003255 ORTHO05D003705 1.1e-11 75.1 290 25.9
arahy.Tifrunner.gnm1.ann1.6P03AF Arachis hypogaea HOM05D003255 ORTHO05D003705 1.9e-11 74.3 181 29.3
CAN.G317.14 Capsicum annuum HOM05D003255 ORTHO05D003705 1.9e-11 74.3 283 24.7
Peaxi162Scf00076g01038 Petunia axillaris HOM05D003255 ORTHO05D003705 1.9e-11 74.3 292 26.4
Os03g0748300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 2.5e-11 73.9 189 27.0
GSVIVG01033392001 Vitis vinifera HOM05D003255 ORTHO05D003705 2.5e-11 73.9 270 26.3
Solyc03g062710.4 Solanum lycopersicum HOM05D003255 ORTHO05D003705 4.3e-11 73.2 281 27.0
vmacro12570 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 4.3e-11 73.2 285 26.3
Cc06_g22880 Coffea canephora HOM05D003255 ORTHO05D003705 5.6e-11 72.8 254 24.0
Manes.09G142000 Manihot esculenta HOM05D003255 ORTHO05D003705 5.6e-11 72.8 284 24.3
PSO339G1718 Papaver somniferum HOM05D003255 ORTHO05D003705 5.6e-11 72.8 185 26.5
Sopen03g015020 Solanum pennellii HOM05D003255 ORTHO05D003705 5.6e-11 72.8 281 26.3
CiPaw.10G000700 Carya illinoinensis HOM05D003255 ORTHO05D003705 7.4e-11 72.4 289 26.6
ClCG04G005290 Citrullus lanatus HOM05D003255 ORTHO05D003705 9.6e-11 72.0 261 26.1
Rhsim03G0001300 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.3e-10 71.6 287 25.1
Actinidia30556 Actinidia chinensis HOM05D003255 ORTHO05D003705 1.6e-10 71.2 277 28.5
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 1.6e-10 71.2 181 29.3
Phvul.004G079500 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 2.8e-10 70.5 186 29.6
Sp1g41050 Schrenkiella parvula HOM05D003255 ORTHO05D003705 2.8e-10 70.5 215 27.0
Cpa.g.sc51.108 Carica papaya HOM05D003255 ORTHO05D003705 3.7e-10 70.1 268 24.6
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 3.7e-10 70.1 285 24.9
Aqoxy2G00586 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 4.8e-10 69.7 288 24.0
Lsat_1_v5_gn_6_36901 Lactuca sativa HOM05D003255 ORTHO05D003705 4.8e-10 69.7 161 29.2
A06p00210 Brassica napus HOM05D003255 ORTHO05D003705 6.2e-10 69.3 280 24.6
BraA06t23237Z Brassica rapa HOM05D003255 ORTHO05D003705 6.2e-10 69.3 280 24.6
CSS0017996 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 6.2e-10 69.3 282 24.5
TWI60G0442 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 1.1e-09 68.6 286 23.4
Atru.chr2.1364 Acer truncatum HOM05D003255 ORTHO05D003705 1.4e-09 68.2 251 23.9
CsaV3_4G013300 Cucumis sativus L. HOM05D003255 ORTHO05D003705 2.4e-09 67.4 249 25.7
PGR142G1693 Punica granatum HOM05D003255 ORTHO05D003705 2.4e-09 67.4 302 24.5
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 4.0e-09 66.6 338 22.5
Sabra19G0041900 Salix brachista HOM05D003255 ORTHO05D003705 4.0e-09 66.6 301 24.3
ATR0697G052 Amborella trichopoda HOM05D003255 ORTHO05D003705 5.3e-09 66.2 284 24.3
MELO3C008799.2 Cucumis melo HOM05D003255 ORTHO05D003705 6.9e-09 65.9 255 24.7
Prupe.7G003600 Prunus persica HOM05D003255 ORTHO05D003705 9.0e-09 65.5 294 22.1
ECA233G3001 Erigeron canadensis HOM05D000074 ORTHO05D000696 1.2e-08 65.1 270 24.1
AagrBONN_evm.TU.Sc2ySwM_368.2200 Anthoceros agrestis HOM05D003255 ORTHO05D003705 1.5e-08 64.7 165 31.5
HanXRQChr13g0398041 Helianthus annuus HOM05D003255 ORTHO05D003705 1.5e-08 64.7 281 23.1
QL07p019728 Quercus lobata HOM05D003255 ORTHO05D003705 2.6e-08 63.9 186 25.8
QL07p020062 Quercus lobata HOM05D003255 ORTHO05D003705 2.6e-08 63.9 186 25.8
AT1G55370 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 4.5e-08 63.2 185 27.0
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 5.8e-08 62.8 212 24.1
Potri.019G034000 Populus trichocarpa HOM05D003255 ORTHO05D003705 5.8e-08 62.8 301 21.9
unitig_37.g12787 Utricularia gibba HOM05D003255 ORTHO05D003705 5.8e-08 62.8 287 23.3
CARHR045040 Cardamine hirsuta HOM05D003255 ORTHO05D003705 7.6e-08 62.4 278 23.7
Sed0011624 Sechium edule HOM05D003255 ORTHO05D003705 9.9e-08 62.0 272 23.5
Oeu060006.1 Olea europaea HOM05D003255 ORTHO05D003705 1.7e-07 61.2 269 24.5
MD14G1002400 Malus domestica HOM05D003255 ORTHO05D003705 2.2e-07 60.8 287 22.6
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.9e-07 60.5 285 23.9
FAN19G2054 Fragaria x ananassa HOM05D003255 ORTHO05D003705 2.9e-07 60.5 295 23.1
Zm00001eb403240 Zea mays HOM05D003255 ORTHO05D003705 2.9e-07 60.5 193 27.5
FvH4_1g28070 Fragaria vesca HOM05D003255 ORTHO05D003705 3.8e-07 60.1 295 22.7
Carub.0001s4389 Capsella rubella HOM05D003255 ORTHO05D003705 4.9e-07 59.7 205 23.4
PGR142G0348 Punica granatum HOM05D003255 ORTHO05D003705 4.9e-07 59.7 185 24.3
AL1G63430 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 6.4e-07 59.3 187 25.1
Pp3c25_5270 Physcomitrium patens HOM05D003255 ORTHO05D003705 8.4e-07 58.9 257 23.7
Aa31LG10G1180 Aethionema arabicum HOM05D003255 ORTHO05D003705 1.9e-06 57.8 206 24.8
PSO339G4182 Papaver somniferum HOM05D003255 ORTHO05D003705 1.9e-06 57.8 190 24.2
Oeu012405.1 Olea europaea HOM05D003255 ORTHO05D003705 2.5e-06 57.4 182 23.6
MSTRG.19937 Avicennia marina HOM05D003255 ORTHO05D003705 3.2e-06 57.0 160 24.4
BcaC08g43621 Brassica carinata HOM05D003255 ORTHO05D003705 4.2e-06 56.6 185 25.9
C06p10350 Brassica napus HOM05D003255 ORTHO05D003705 4.2e-06 56.6 185 25.9
BolC6t36111H Brassica oleracea HOM05D003255 ORTHO05D003705 5.5e-06 56.2 185 25.9
PSO384G0936 Papaver somniferum HOM05D003255 ORTHO05D003705 5.5e-06 56.2 182 24.7
Thhalv10011597m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 7.1e-06 55.8 204 24.5
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 9.3e-06 55.5 162 30.2
GSVIVG01033393001 Vitis vinifera HOM05D003255 ORTHO05D003705 9.3e-06 55.5 184 22.3


User provided reference genes

Program Settings