Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO274G0041 Selaginella moellendorffii HOM05D001629 ORTHO05D015134 8.2e-88 327.0 164 100.0
SMO274G0073 Selaginella moellendorffii HOM05D000252 ORTHO05D015134 6.0e-30 134.8 208 47.1
SMO165G0040 Selaginella moellendorffii HOM05D000252 ORTHO05D015134 8.1e-27 124.4 239 40.6
SMO112G0127 Selaginella moellendorffii HOM05D001629 ORTHO05D015134 2.1e-22 109.8 57 98.2
SMO244G0017 Selaginella moellendorffii HOM05D000252 ORTHO05D015134 1.7e-21 106.7 280 37.1
SMO122G0007 Selaginella moellendorffii HOM05D001629 ORTHO05D015134 1.2e-17 94.0 142 48.6
SMO364G0686 Selaginella moellendorffii HOM05D001629 ORTHO05D003842 8.7e-13 77.8 45 91.1
SMO274G0044 Selaginella moellendorffii HOM05D000252 ORTHO05D015134 9.0e-10 67.8 59 62.7
CANSAT56G2113 Cannabis sativa HOM05D001629 ORTHO05D003842 4.4e-09 65.5 44 72.7
SMO112G0026 Selaginella moellendorffii HOM05D000252 ORTHO05D015134 7.6e-09 64.7 33 97.0
MD17G1202000 Malus domestica HOM05D001629 ORTHO05D003842 3.8e-08 62.4 43 72.1
Prupe.3G077700 Prunus persica HOM05D001629 ORTHO05D003842 3.8e-08 62.4 43 72.1
Lj3g0014600 Lotus japonicus HOM05D001629 ORTHO05D003842 4.9e-08 62.0 43 69.8
Medtr2g102800 Medicago truncatula HOM05D001629 ORTHO05D003842 6.4e-08 61.6 43 67.4
Psat0s2701g0040 Pisum sativum HOM05D001629 ORTHO05D003842 6.4e-08 61.6 43 67.4
TPR.G37153 Trifolium pratense HOM05D001629 ORTHO05D003842 6.4e-08 61.6 43 67.4
COL.COLO4_12865 Corchorus olitorius HOM05D001629 ORTHO05D003842 8.4e-08 61.2 43 72.1
Glyma.13G362400 Glycine max HOM05D001629 ORTHO05D003842 8.4e-08 61.2 43 67.4
MD09G1218700 Malus domestica HOM05D001629 ORTHO05D003842 8.4e-08 61.2 44 68.2
RcHm_v2.0_Chr2g0137001 Rosa chinensis HOM05D001629 ORTHO05D003842 1.1e-07 60.8 43 69.8
TPR.G38620 Trifolium pratense HOM05D001629 ORTHO05D003842 1.1e-07 60.8 43 65.1
TPR.G6878 Trifolium pratense HOM05D000917 ORTHO05D000764 1.1e-07 60.8 43 65.1
Ca_07176_v3 Cicer arietinum L. HOM05D001629 ORTHO05D003842 1.4e-07 60.5 40 70.0
FvH4_6g30590 Fragaria vesca HOM05D001629 ORTHO05D003842 1.4e-07 60.5 44 65.9
FAN14G3427 Fragaria x ananassa HOM05D001629 ORTHO05D003842 1.4e-07 60.5 44 65.9
Aa31LG10G2290 Aethionema arabicum HOM05D001629 ORTHO05D003842 1.9e-07 60.1 51 64.7
Glyma.07G033000 Glycine max HOM05D001629 ORTHO05D003842 1.9e-07 60.1 42 69.0
Glyma.08G209200 Glycine max HOM05D001629 ORTHO05D003842 1.9e-07 60.1 42 69.0
Lalb_Chr22g0351061 Lupinus albus HOM05D001629 ORTHO05D003842 1.9e-07 60.1 43 65.1
Cpa.g.sc10.201 Carica papaya HOM05D001629 ORTHO05D003842 2.4e-07 59.7 44 65.9
FAN09G3957 Fragaria x ananassa HOM05D001629 ORTHO05D003842 2.4e-07 59.7 44 63.6
Medtr4g011440 Medicago truncatula HOM05D001629 ORTHO05D003842 2.4e-07 59.7 42 66.7
Phvul.010G153000 Phaseolus vulgaris HOM05D001629 ORTHO05D003842 2.4e-07 59.7 42 71.4
Pp3c27_6880 Physcomitrium patens HOM05D001629 ORTHO05D003842 2.4e-07 59.7 59 55.9
arahy.Tifrunner.gnm1.ann1.62DI5E Arachis hypogaea HOM05D001629 ORTHO05D003842 3.2e-07 59.3 44 61.4
arahy.Tifrunner.gnm1.ann1.I8612F Arachis hypogaea HOM05D001629 ORTHO05D003842 3.2e-07 59.3 44 61.4
Cfa002025 Carpinus fangiana HOM05D001629 ORTHO05D003842 3.2e-07 59.3 44 65.9
Ca_01093_v3 Cicer arietinum L. HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 65.1
Ciclev10025112m.g Citrus clementina HOM05D001629 ORTHO05D003842 3.2e-07 59.3 58 56.9
Duzib235G1342 Durio zibethinus HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 67.4
Glyma.15G011400 Glycine max HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 65.1
Gohir.A10G077700 Gossypium hirsutum HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 67.4
Gohir.D10G073900 Gossypium hirsutum HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 67.4
Gorai.011G079700 Gossypium raimondii HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 67.4
Nn8g39343 Nelumbo nucifera HOM05D001629 ORTHO05D003842 3.2e-07 59.3 44 65.9
Phvul.005G174100 Phaseolus vulgaris HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 62.8
TAR625G1051 Trochodendron aralioides HOM05D001629 ORTHO05D003842 3.2e-07 59.3 43 65.1
DCAR_025609 Daucus carota HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 65.1
FAN02G1507 Fragaria x ananassa HOM05D001629 ORTHO05D003842 4.2e-07 58.9 38 71.1
Gohir.A05G124200 Gossypium hirsutum HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 67.4
Gohir.D05G125200 Gossypium hirsutum HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 67.4
Gorai.009G129200 Gossypium raimondii HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 67.4
Lalb_Chr14g0373601 Lupinus albus HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 62.8
Manes.11G049200 Manihot esculenta HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 65.1
Psat7g254800 Pisum sativum HOM05D001629 ORTHO05D003842 4.2e-07 58.9 42 61.9
VMungo1080G0185 Vigna mungo HOM05D001629 ORTHO05D003842 4.2e-07 58.9 43 65.1
AT1G52750 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 5.4e-07 58.5 51 60.8
CAN.G438.91 Capsicum annuum HOM05D001629 ORTHO05D003842 5.4e-07 58.5 45 62.2
CiPaw.01G243300 Carya illinoinensis HOM05D001629 ORTHO05D003842 5.4e-07 58.5 43 65.1
Lsat_1_v5_gn_1_33701 Lactuca sativa HOM05D001629 ORTHO05D003842 5.4e-07 58.5 44 63.6
Lalb_Chr07g0177431 Lupinus albus HOM05D001629 ORTHO05D003842 5.4e-07 58.5 43 62.8
Manes.04G119000 Manihot esculenta HOM05D001629 ORTHO05D003842 5.4e-07 58.5 43 65.1
TWI75G0218 Tripterygium wilfordii HOM05D001629 ORTHO05D003842 5.4e-07 58.5 40 72.5
Lj3g0002261 Lotus japonicus HOM05D001629 ORTHO05D003842 7.1e-07 58.2 42 66.7
TAR636G3140 Trochodendron aralioides HOM05D001629 ORTHO05D003842 7.1e-07 58.2 43 67.4
GSVIVG01017215001 Vitis vinifera HOM05D001629 ORTHO05D003842 7.1e-07 58.2 43 60.5
Actinidia01774 Actinidia chinensis HOM05D001629 ORTHO05D003842 9.3e-07 57.8 54 55.6
Carub.0002s2728 Capsella rubella HOM05D001629 ORTHO05D003842 9.3e-07 57.8 43 62.8
Haze_16500 Corylus avellana HOM05D001629 ORTHO05D003842 9.3e-07 57.8 46 63.0
Gohir.A02G123600 Gossypium hirsutum HOM05D001629 ORTHO05D003842 9.3e-07 57.8 43 65.1
Gorai.002G056600 Gossypium raimondii HOM05D001629 ORTHO05D003842 9.3e-07 57.8 43 65.1
Oeu020518.1 Olea europaea HOM05D001629 ORTHO05D003842 9.3e-07 57.8 44 63.6
Oeu052307.2 Olea europaea HOM05D001629 ORTHO05D003842 9.3e-07 57.8 44 63.6
Pp3c6_29370 Physcomitrium patens HOM05D001629 ORTHO05D003842 9.3e-07 57.8 57 57.9
Pp3c6_29375 Physcomitrium patens HOM05D001629 ORTHO05D003842 9.3e-07 57.8 57 57.9
Sp1g39320 Schrenkiella parvula HOM05D001629 ORTHO05D003842 9.3e-07 57.8 51 60.8
Thecc.06G077000 Theobroma cacao HOM05D001629 ORTHO05D003842 9.3e-07 57.8 43 65.1
VMungo0331G0430 Vigna mungo HOM05D001629 ORTHO05D003842 9.3e-07 57.8 50 62.0
MSTRG.9443 Avicennia marina HOM05D001629 ORTHO05D003842 1.2e-06 57.4 38 71.1
Haze_16498 Corylus avellana HOM05D001629 ORTHO05D003842 1.2e-06 57.4 42 66.7
DCAR_025468 Daucus carota HOM05D001629 ORTHO05D003842 1.2e-06 57.4 40 67.5
Lalb_Chr04g0262531 Lupinus albus HOM05D001629 ORTHO05D003842 1.2e-06 57.4 43 62.8
Nn2g11902 Nelumbo nucifera HOM05D001629 ORTHO05D003842 1.2e-06 57.4 43 65.1
Pp3c5_1730 Physcomitrium patens HOM05D001629 ORTHO05D003842 1.2e-06 57.4 45 64.4
Potri.001G174900 Populus trichocarpa HOM05D001629 ORTHO05D003842 1.2e-06 57.4 43 62.8
Sabra01G0137400 Salix brachista HOM05D001629 ORTHO05D003842 1.2e-06 57.4 43 62.8
SGA_v2.0_scaffold16G07628 Striga asiatica HOM05D001629 ORTHO05D003842 1.2e-06 57.4 46 60.9
Carub.0001s4183 Capsella rubella HOM05D001629 ORTHO05D003842 1.6e-06 57.0 40 72.5
CAN.G395.37 Capsicum annuum HOM05D001629 ORTHO05D003842 1.6e-06 57.0 44 63.6
Peaxi162Scf00015g00523 Petunia axillaris HOM05D001629 ORTHO05D003842 1.6e-06 57.0 49 55.1
Solyc06g067890.3 Solanum lycopersicum HOM05D001629 ORTHO05D003842 1.6e-06 57.0 44 63.6
Sopen06g025170 Solanum pennellii HOM05D001629 ORTHO05D003842 1.6e-06 57.0 44 63.6
PGSC0003DMG400028548 Solanum tuberosum HOM05D001629 ORTHO05D003842 1.6e-06 57.0 44 63.6
THA.LOC104808220 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 1.6e-06 57.0 43 67.4
TAR626G1732 Trochodendron aralioides HOM05D001629 ORTHO05D003842 1.6e-06 57.0 43 65.1
HPP92_023330 Vanilla planifolia HOM05D001629 ORTHO05D003842 1.6e-06 57.0 43 69.8
AL1G61070 Arabidopsis lyrata HOM05D001629 ORTHO05D003842 2.1e-06 56.6 51 58.8
MSTRG.22718 Avicennia marina HOM05D001629 ORTHO05D003842 2.1e-06 56.6 41 65.9
Thhalv10012329m.g Eutrema salsugineum HOM05D001629 ORTHO05D003842 2.1e-06 56.6 51 62.7
Nitab4.5_0000620g0170 Nicotiana tabacum HOM05D001629 ORTHO05D003842 2.1e-06 56.6 44 61.4
Nitab4.5_0003512g0010 Nicotiana tabacum HOM05D001629 ORTHO05D003842 2.1e-06 56.6 44 61.4
Peaxi162Scf00207g00740 Petunia axillaris HOM05D001629 ORTHO05D003842 2.1e-06 56.6 44 61.4
Rhsim08G0217400 Rhododendron simsii HOM05D001629 ORTHO05D003842 2.1e-06 56.6 56 55.4
EL10Ac9g21963 Beta vulgaris HOM05D001629 ORTHO05D003842 2.7e-06 56.2 44 63.6
BraA06t23383Z Brassica rapa HOM05D001629 ORTHO05D003842 2.7e-06 56.2 40 70.0
ECA234G2115 Erigeron canadensis HOM05D001629 ORTHO05D003842 2.7e-06 56.2 41 63.4
Gohir.D03G065800 Gossypium hirsutum HOM05D001629 ORTHO05D003842 2.7e-06 56.2 41 65.9
Potri.003G059400 Populus trichocarpa HOM05D001629 ORTHO05D003842 2.7e-06 56.2 43 60.5
QL05p027122 Quercus lobata HOM05D001629 ORTHO05D003842 2.7e-06 56.2 44 59.1
SMO172G0187 Selaginella moellendorffii HOM05D001629 ORTHO05D003842 2.7e-06 56.2 40 72.5
THA.LOC104815542 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 2.7e-06 56.2 37 73.0
Actinidia15809 Actinidia chinensis HOM05D001629 ORTHO05D003842 3.5e-06 55.8 43 65.1
Ah.01g020970 Amaranthus hybridus HOM05D001629 ORTHO05D003842 3.5e-06 55.8 44 63.6
BcaC08g43449 Brassica carinata HOM05D001629 ORTHO05D003842 3.5e-06 55.8 40 67.5
C06p08200 Brassica napus HOM05D001629 ORTHO05D003842 3.5e-06 55.8 40 67.5
BolC6t35901H Brassica oleracea HOM05D001629 ORTHO05D003842 3.5e-06 55.8 40 67.5
Cc04_g03830 Coffea canephora HOM05D001629 ORTHO05D003842 3.5e-06 55.8 38 68.4
Dinv38080 Davidia involucrata HOM05D001629 ORTHO05D003842 3.5e-06 55.8 43 62.8
Migut.D01045 Erythranthe guttata HOM05D001629 ORTHO05D003842 3.5e-06 55.8 44 63.6
Lj9A503T44 Lonicera japonica HOM05D001629 ORTHO05D003842 3.5e-06 55.8 59 50.8
Sc12g0008950 Simmondsia chinensis HOM05D001629 ORTHO05D003842 3.5e-06 55.8 43 62.8
Aa31LG4G560 Aethionema arabicum HOM05D001629 ORTHO05D003842 4.6e-06 55.5 40 62.5
Aqoxy7G01988 Aquilegia oxysepala HOM05D001629 ORTHO05D003842 4.6e-06 55.5 43 62.8
CARHR042910 Cardamine hirsuta HOM05D001629 ORTHO05D003842 4.6e-06 55.5 51 60.8
Hma1.2p1_0515F.1_g170350 Hydrangea macrophylla HOM05D001629 ORTHO05D003842 4.6e-06 55.5 44 61.4
Nitab4.5_0005786g0020 Nicotiana tabacum HOM05D001629 ORTHO05D003842 4.6e-06 55.5 41 63.4
Sp5g35530 Schrenkiella parvula HOM05D001629 ORTHO05D003842 4.6e-06 55.5 45 57.8
ATR0716G028 Amborella trichopoda HOM05D001629 ORTHO05D003842 6.0e-06 55.1 60 53.3
HanXRQChr16g0504231 Helianthus annuus HOM05D001629 ORTHO05D003842 6.0e-06 55.1 43 62.8
SGA_v2.0_scaffold37G14797 Striga asiatica HOM05D001629 ORTHO05D003842 6.0e-06 55.1 44 61.4
AT1G80280 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 7.8e-06 54.7 41 58.5
A06p01650 Brassica napus HOM05D001629 ORTHO05D003842 7.8e-06 54.7 40 67.5
AUR62011590 Chenopodium quinoa HOM05D001629 ORTHO05D003842 7.8e-06 54.7 46 60.9
AUR62016405 Chenopodium quinoa HOM05D001629 ORTHO05D003842 7.8e-06 54.7 46 60.9
Thhalv10018250m.g Eutrema salsugineum HOM05D001629 ORTHO05D003842 7.8e-06 54.7 40 62.5
Lj5A67T54 Lonicera japonica HOM05D001629 ORTHO05D003842 7.8e-06 54.7 43 62.8
Nitab4.5_0000410g0370 Nicotiana tabacum HOM05D001629 ORTHO05D003842 7.8e-06 54.7 41 63.4
PSO017G4027 Papaver somniferum HOM05D001629 ORTHO05D003842 7.8e-06 54.7 43 62.8
PGR102G2868 Punica granatum HOM05D001629 ORTHO05D003842 7.8e-06 54.7 43 65.1
Sabra03G0034000 Salix brachista HOM05D001629 ORTHO05D003842 7.8e-06 54.7 43 58.1
Solyc03g119990.4 Solanum lycopersicum HOM05D001629 ORTHO05D003842 7.8e-06 54.7 41 61.0
Sopen03g038870 Solanum pennellii HOM05D001629 ORTHO05D003842 7.8e-06 54.7 41 61.0
PGSC0003DMG400005696 Solanum tuberosum HOM05D001629 ORTHO05D003842 7.8e-06 54.7 41 61.0


User provided reference genes

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