Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO273G0019 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.3e-105 386.3 190 100.0
SMO147G0196 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 8.6e-89 330.5 236 75.0
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 3.8e-44 182.2 236 42.8
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 2.1e-42 176.4 237 44.7
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 6.2e-39 164.9 236 39.8
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 1.4e-38 163.7 236 39.8
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 1.8e-38 163.3 237 40.9
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 1.8e-38 163.3 236 39.4
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.8e-38 163.3 237 40.5
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.8e-38 163.3 237 40.5
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 2.4e-38 162.9 237 42.6
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 3.1e-38 162.5 218 41.3
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 6.9e-38 161.4 237 42.2
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 6.9e-38 161.4 237 40.1
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 2.0e-37 159.8 237 40.1
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 2.6e-37 159.5 237 40.1
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 2.6e-37 159.5 239 41.0
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 3.4e-37 159.1 237 39.7
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 3.4e-37 159.1 237 40.1
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 3.4e-37 159.1 237 40.1
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 4.5e-37 158.7 240 37.9
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 4.5e-37 158.7 237 40.1
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 4.5e-37 158.7 237 40.1
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 4.5e-37 158.7 237 39.2
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 5.8e-37 158.3 237 40.1
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 7.6e-37 157.9 237 38.4
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 7.6e-37 157.9 239 39.7
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 7.6e-37 157.9 237 40.1
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 7.6e-37 157.9 237 40.1
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 7.6e-37 157.9 239 40.6
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 7.6e-37 157.9 236 39.4
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 1.0e-36 157.5 242 38.8
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.0e-36 157.5 237 38.4
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 1.3e-36 157.1 237 39.2
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 1.3e-36 157.1 237 41.4
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.7e-36 156.8 237 39.2
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 1.7e-36 156.8 239 39.3
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 2.2e-36 156.4 237 38.8
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 2.2e-36 156.4 239 41.0
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 2.9e-36 156.0 237 40.5
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 2.9e-36 156.0 237 39.7
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 2.9e-36 156.0 239 41.4
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 3.8e-36 155.6 237 40.1
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 4.9e-36 155.2 237 39.7
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 4.9e-36 155.2 237 39.2
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 6.5e-36 154.8 237 38.4
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 6.5e-36 154.8 237 38.4
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 6.5e-36 154.8 237 38.8
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 8.4e-36 154.5 237 39.2
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 8.4e-36 154.5 237 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05D003351 ORTHO05D003806 1.1e-35 154.1 235 41.3
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 1.1e-35 154.1 237 38.4
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 1.1e-35 154.1 239 38.9
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 1.9e-35 153.3 239 41.0
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.9e-35 153.3 237 38.8
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 1.9e-35 153.3 237 38.4
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.9e-35 153.3 237 38.8
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 1.9e-35 153.3 239 39.7
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 1.9e-35 153.3 237 37.6
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 3.2e-35 152.5 238 37.4
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 3.2e-35 152.5 237 38.4
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 4.2e-35 152.1 237 38.4
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 4.2e-35 152.1 237 38.4
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 4.2e-35 152.1 237 39.2
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 4.2e-35 152.1 237 38.0
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 4.2e-35 152.1 237 39.7
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 4.2e-35 152.1 237 38.4
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 5.5e-35 151.8 237 38.8
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 5.5e-35 151.8 237 38.4
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 5.5e-35 151.8 237 40.5
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 5.5e-35 151.8 236 39.8
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 5.5e-35 151.8 237 39.2
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 7.1e-35 151.4 190 42.1
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 7.1e-35 151.4 242 36.8
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 9.3e-35 151.0 237 38.4
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 1.2e-34 150.6 237 38.0
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.2e-34 150.6 237 38.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.2e-34 150.6 237 38.0
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.2e-34 150.6 237 38.0
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.2e-34 150.6 237 38.0
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 1.2e-34 150.6 242 38.4
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 1.2e-34 150.6 237 36.7
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.2e-34 150.6 239 38.9
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 1.2e-34 150.6 239 38.9
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 1.6e-34 150.2 239 38.5
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.6e-34 150.2 239 38.1
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 1.6e-34 150.2 239 38.1
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 2.1e-34 149.8 237 36.7
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 2.1e-34 149.8 237 38.4
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 2.1e-34 149.8 237 38.4
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 2.1e-34 149.8 245 38.0
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 2.7e-34 149.4 235 39.1
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 2.7e-34 149.4 237 38.4
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 2.7e-34 149.4 235 38.3
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 4.6e-34 148.7 236 39.8
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 4.6e-34 148.7 237 36.3
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 4.6e-34 148.7 237 36.3
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 4.6e-34 148.7 239 37.7
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 6.0e-34 148.3 237 35.9
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 6.0e-34 148.3 236 38.1
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 6.0e-34 148.3 237 38.0
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 7.9e-34 147.9 237 35.9
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 7.9e-34 147.9 237 35.9
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 1.0e-33 147.5 233 36.9
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 1.3e-33 147.1 237 37.1
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 1.8e-33 146.7 237 38.0
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.8e-33 146.7 204 41.7
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 1.8e-33 146.7 239 37.7
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 1.8e-33 146.7 237 38.4
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 2.3e-33 146.4 238 36.6
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 2.3e-33 146.4 237 37.6
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 2.3e-33 146.4 236 39.4
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 3.0e-33 146.0 236 35.6
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 3.0e-33 146.0 240 36.2
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 3.9e-33 145.6 266 35.3
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-32 144.1 234 39.7
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 1.5e-32 143.7 233 38.2
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 1.5e-32 143.7 237 38.4
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 1.9e-32 143.3 237 37.6
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 4.3e-32 142.1 237 36.7
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 4.3e-32 142.1 237 38.0
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 5.7e-32 141.7 237 38.0
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 1.3e-31 140.6 237 37.6
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 3.7e-31 139.0 239 36.4
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 4.8e-31 138.7 237 35.0
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 1.1e-30 137.5 257 35.8
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 2.4e-30 136.3 239 34.7
TAR374G1710 Trochodendron aralioides HOM05D003351 ORTHO05D003806 3.1e-30 136.0 212 39.6
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 9.0e-30 134.4 237 38.0
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 1.5e-29 133.7 212 37.3
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 4.5e-29 132.1 239 35.1
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 5.9e-29 131.7 225 38.2
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 2.9e-28 129.4 261 34.1
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 3.8e-28 129.0 212 37.3
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 3.8e-28 129.0 227 37.0
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 8.4e-28 127.9 261 33.7
SEGI_22600 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 1.4e-27 127.1 208 38.0
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 2.5e-27 126.3 214 36.0
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 3.2e-27 125.9 261 33.7
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 3.2e-27 125.9 261 33.7
CAN.G78.57 Capsicum annuum HOM05D003351 ORTHO05D003806 7.2e-27 124.8 179 39.7
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 2.7e-26 122.9 202 37.1
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 1.8e-25 120.2 245 34.7
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 3.0e-25 119.4 236 33.5
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 6.7e-25 118.2 248 33.1
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 8.7e-25 117.9 236 33.1
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 1.5e-24 117.1 208 33.7
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 2.2e-23 113.2 210 34.3
PRCOL_00006030 Prasinoderma coloniale HOM05D003351 ORTHO05D003806 1.5e-21 107.1 258 31.4
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 2.2e-20 103.2 197 35.5
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 5.0e-20 102.1 217 33.2
SMO147G0373 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.9e-19 100.1 161 39.1
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 2.5e-19 99.8 138 38.4
unitig_22.g6719 Utricularia gibba HOM05D003351 ORTHO05D003806 3.2e-19 99.4 155 36.1
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 4.2e-19 99.0 148 39.2
Oeu037305.1 Olea europaea HOM05D003351 ORTHO05D003806 5.1e-17 92.0 138 35.5
CAN.G78.58 Capsicum annuum HOM05D003351 ORTHO05D003806 2.0e-16 90.1 147 33.3
Oeu037304.1 Olea europaea HOM05D003351 ORTHO05D003806 2.0e-16 90.1 115 39.1
CiPaw.01G060400 Carya illinoinensis HOM05D003351 ORTHO05D003806 1.7e-15 87.0 175 31.4
Glyma.18G232200 Glycine max HOM05D003351 ORTHO05D003806 2.2e-15 86.7 143 38.5
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 2.8e-15 86.3 129 38.0
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 4.8e-15 85.5 169 37.3
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 8.2e-15 84.7 68 60.3
Cfa022652 Carpinus fangiana HOM05D003351 ORTHO05D003806 1.1e-14 84.3 264 26.5
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 1.1e-14 84.3 157 33.1
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 4.5e-13 79.0 138 32.6
QL05p057193 Quercus lobata HOM05D003351 ORTHO05D003806 5.9e-13 78.6 95 40.0
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 7.7e-13 78.2 68 54.4
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 1.7e-12 77.0 67 56.7
Hund27283 Selenicereus undatus HOM05D003351 ORTHO05D003806 5.0e-12 75.5 73 49.3
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 1.1e-11 74.3 69 59.4
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 2.1e-10 70.1 69 47.8
Glyma.18G232100 Glycine max HOM05D003351 ORTHO05D003806 7.9e-10 68.2 50 58.0
HanXRQChr04g0103041 Helianthus annuus HOM05D003351 ORTHO05D003806 7.9e-10 68.2 67 55.2
PGSC0003DMG400000037 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.8e-09 67.0 46 56.5
SHI13440 Sapria himalayana HOM05D003351 ORTHO05D003806 3.7e-07 59.3 175 32.6
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 3.7e-07 59.3 216 27.3
MD01G1059000 Malus domestica HOM05D003351 ORTHO05D003806 6.3e-07 58.5 94 38.3
PGSC0003DMG400000200 Solanum tuberosum HOM05D003351 ORTHO05D003806 6.3e-07 58.5 115 33.0
Potri.002G159150 Populus trichocarpa HOM05D003351 ORTHO05D003806 3.1e-06 56.2 52 48.1


User provided reference genes

Program Settings