Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO272G0025 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 1.8e-173 612.5 297 100.0
SMO272G0013 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 7.1e-74 281.6 463 41.5
SMO198G0080 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 7.0e-53 211.8 372 40.6
SMO198G0077 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 1.0e-24 118.2 422 28.0
SMO340G0162 Selaginella moellendorffii HOM05D000079 ORTHO05D004240 3.9e-19 99.8 340 26.2
SMO358G0644 Selaginella moellendorffii HOM05D000079 ORTHO05D004240 3.3e-18 96.7 340 26.2
Phvul.006G098300 Phaseolus vulgaris HOM05D000079 ORTHO05D000508 8.6e-11 72.0 148 29.7
SMO136G0003 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 6.2e-09 65.9 56 48.2
SMO116G0112 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 8.0e-09 65.5 56 48.2
Sopen11g010680 Solanum pennellii HOM05D000079 ORTHO05D000508 8.0e-09 65.5 131 33.6
vmacro01842 Vaccinium macrocarpon HOM05D000148 ORTHO05D000081 8.0e-09 65.5 142 29.6
Nitab4.5_0008398g0030 Nicotiana tabacum HOM05D000079 ORTHO05D000508 3.1e-08 63.5 90 40.0
Solyc08g005770.3 Solanum lycopersicum HOM05D000079 ORTHO05D000508 8.9e-08 62.0 73 42.5
Sopen08g001770 Solanum pennellii HOM05D000079 ORTHO05D000508 8.9e-08 62.0 73 42.5
RhsimUnG0187600 Rhododendron simsii HOM05D000148 ORTHO05D000081 1.5e-07 61.2 151 28.5
SMO217G0020 Selaginella moellendorffii HOM05D000079 ORTHO05D374129 1.5e-07 61.2 187 28.3
ECA234G2841 Erigeron canadensis HOM05D001787 ORTHO05D003488 2.0e-07 60.8 57 43.9
ECA236G1904 Erigeron canadensis HOM05D000079 ORTHO05D000211 2.0e-07 60.8 49 55.1
TWI36G0582 Tripterygium wilfordii HOM05D002298 ORTHO05D002415 2.0e-07 60.8 82 37.8
CANSAT11G1114 Cannabis sativa HOM05D000079 ORTHO05D000211 2.6e-07 60.5 83 38.6
Gohir.D05G054200 Gossypium hirsutum HOM05D000079 ORTHO05D000211 2.6e-07 60.5 85 37.6
Lj1g0021645 Lotus japonicus HOM05D000079 ORTHO05D000211 2.6e-07 60.5 70 40.0
RhsimUnG0105200 Rhododendron simsii HOM05D000148 ORTHO05D000081 2.6e-07 60.5 151 27.8
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.6e-07 60.5 68 44.1
Lj7A462T52 Lonicera japonica HOM05D000079 ORTHO05D000211 3.4e-07 60.1 54 42.6
Lj7P463T13 Lonicera japonica HOM05D000079 ORTHO05D000211 3.4e-07 60.1 54 42.6
Lalb_Chr08g0237351 Lupinus albus HOM05D000079 ORTHO05D000211 3.4e-07 60.1 72 37.5
Pp3c27_3230 Physcomitrium patens HOM05D000079 ORTHO05D012760 3.4e-07 60.1 200 27.0
SMO116G0296 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 3.4e-07 60.1 56 44.6
SMO361G0616 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 3.4e-07 60.1 56 44.6
Solyc08g005760.1 Solanum lycopersicum HOM05D000079 ORTHO05D000508 3.4e-07 60.1 73 43.8
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 3.4e-07 60.1 98 36.7
arahy.Tifrunner.gnm1.ann1.GD0HFB Arachis hypogaea HOM05D000079 ORTHO05D000211 4.4e-07 59.7 70 35.7
BcaNung00285 Brassica carinata HOM05D000148 ORTHO05D000081 4.4e-07 59.7 117 35.0
CANSAT56G1946 Cannabis sativa HOM05D000079 ORTHO05D000211 4.4e-07 59.7 70 44.3
Cpa.g.sc46.187 Carica papaya HOM05D000079 ORTHO05D000211 4.4e-07 59.7 80 36.2
Lj8A135T101 Lonicera japonica HOM05D000079 ORTHO05D000211 4.4e-07 59.7 58 43.1
Nn2g12445 Nelumbo nucifera HOM05D000079 ORTHO05D000211 4.4e-07 59.7 79 35.4
GSVIVG01023651001 Vitis vinifera HOM05D000079 ORTHO05D000211 4.4e-07 59.7 68 41.2
Actinidia23560 Actinidia chinensis HOM05D000079 ORTHO05D000211 5.8e-07 59.3 76 40.8
SHI11302 Sapria himalayana HOM05D000079 ORTHO05D000211 5.8e-07 59.3 196 28.6
PGSC0003DMG400024139 Solanum tuberosum HOM05D000079 ORTHO05D000508 5.8e-07 59.3 73 41.1
Glyma.04G198000 Glycine max HOM05D000079 ORTHO05D000211 7.5e-07 58.9 63 41.3
Phvul.006G098600 Phaseolus vulgaris HOM05D000079 ORTHO05D000508 7.5e-07 58.9 79 35.4
PGSC0003DMG400025219 Solanum tuberosum HOM05D000079 ORTHO05D000508 7.5e-07 58.9 66 43.9
arahy.Tifrunner.gnm1.ann1.9NYV5L Arachis hypogaea HOM05D000079 ORTHO05D000211 9.8e-07 58.5 70 34.3
CANSAT56G3749 Cannabis sativa HOM05D000079 ORTHO05D000211 9.8e-07 58.5 88 39.8
Glyma.06G167600 Glycine max HOM05D000079 ORTHO05D000211 9.8e-07 58.5 63 41.3
Medtr3g098980 Medicago truncatula HOM05D000079 ORTHO05D000211 9.8e-07 58.5 63 39.7
Solyc05g015800.3 Solanum lycopersicum HOM05D000079 ORTHO05D000508 9.8e-07 58.5 73 41.1
CANSAT56G2484 Cannabis sativa HOM05D000079 ORTHO05D000211 1.3e-06 58.2 84 36.9
Dinv41354 Davidia involucrata HOM05D000079 ORTHO05D000211 1.3e-06 58.2 77 36.4
Gorai.009G055900 Gossypium raimondii HOM05D000079 ORTHO05D000211 1.3e-06 58.2 84 36.9
Manes.06G033850 Manihot esculenta HOM05D000079 ORTHO05D000211 1.3e-06 58.2 68 36.8
Manes.06G034601 Manihot esculenta HOM05D000079 ORTHO05D000211 1.3e-06 58.2 68 36.8
Nn6g34924 Nelumbo nucifera HOM05D000079 ORTHO05D000211 1.3e-06 58.2 91 34.1
Nitab4.5_0001351g0050 Nicotiana tabacum HOM05D000079 ORTHO05D000508 1.3e-06 58.2 67 41.8
SMO217G0007 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 1.3e-06 58.2 49 49.0
SMO340G0136 Selaginella moellendorffii HOM05D000079 ORTHO05D004240 1.3e-06 58.2 44 50.0
Thecc.03G134400 Theobroma cacao HOM05D000079 ORTHO05D000211 1.3e-06 58.2 64 39.1
Atru.chr7.829 Acer truncatum HOM05D000079 ORTHO05D000211 1.7e-06 57.8 62 38.7
COL.COLO4_28795 Corchorus olitorius HOM05D000079 ORTHO05D000211 1.7e-06 57.8 76 42.1
Dinv41351 Davidia involucrata HOM05D000079 ORTHO05D000211 1.7e-06 57.8 84 34.5
Gohir.A03G054200 Gossypium hirsutum HOM05D000079 ORTHO05D000211 1.7e-06 57.8 63 38.1
Gorai.003G119000 Gossypium raimondii HOM05D000079 ORTHO05D000211 1.7e-06 57.8 63 38.1
Manes.06G034800 Manihot esculenta HOM05D000079 ORTHO05D000211 1.7e-06 57.8 68 36.8
RcHm_v2.0_Chr5g0066761 Rosa chinensis HOM05D000079 ORTHO05D000211 1.7e-06 57.8 94 36.2
SMO356G0501 Selaginella moellendorffii HOM05D015318 ORTHO05D376251 1.7e-06 57.8 49 49.0
TWI32G0706 Tripterygium wilfordii HOM05D000079 ORTHO05D000211 1.7e-06 57.8 62 41.9
GSVIVG01010912001 Vitis vinifera HOM05D000079 ORTHO05D000211 1.7e-06 57.8 91 31.9
CDE06G2040 Ceratophyllum demersum HOM05D000079 ORTHO05D003772 2.2e-06 57.4 173 27.7
Dinv41362 Davidia involucrata HOM05D000079 ORTHO05D000211 2.2e-06 57.4 108 31.5
ECA234G2053 Erigeron canadensis HOM05D000079 ORTHO05D000211 2.2e-06 57.4 76 39.5
Lsat_1_v5_gn_5_83361 Lactuca sativa HOM05D000079 ORTHO05D000211 2.2e-06 57.4 57 40.4
Lj5g0013965 Lotus japonicus HOM05D000148 ORTHO05D000081 2.2e-06 57.4 57 47.4
Peaxi162Scf01732g00002 Petunia axillaris HOM05D000148 ORTHO05D000081 2.2e-06 57.4 85 34.1
Potri.018G109900 Populus trichocarpa HOM05D000079 ORTHO05D000211 2.2e-06 57.4 48 43.8
SMO356G0226 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 2.2e-06 57.4 49 49.0
TWI32G0055 Tripterygium wilfordii HOM05D000079 ORTHO05D000211 2.2e-06 57.4 62 41.9
Zm00001eb027660 Zea mays HOM05D000079 ORTHO05D000211 2.2e-06 57.4 57 42.1
Actinidia23559 Actinidia chinensis HOM05D000079 ORTHO05D000211 2.9e-06 57.0 76 39.5
CANSAT11G1536 Cannabis sativa HOM05D000079 ORTHO05D000211 2.9e-06 57.0 55 47.3
CDE05G2468 Ceratophyllum demersum HOM05D000079 ORTHO05D009764 2.9e-06 57.0 48 43.8
Duzib150G1553 Durio zibethinus HOM05D000079 ORTHO05D000211 2.9e-06 57.0 84 35.7
FAN11G0929 Fragaria x ananassa HOM05D000079 ORTHO05D000211 2.9e-06 57.0 68 44.1
Pp3c16_11740 Physcomitrium patens HOM05D000079 ORTHO05D000211 2.9e-06 57.0 65 38.5
Potri.014G166600 Populus trichocarpa HOM05D000079 ORTHO05D000211 2.9e-06 57.0 62 41.9
Sed0018922 Sechium edule HOM05D000079 ORTHO05D000211 2.9e-06 57.0 82 31.7
SMO356G0498 Selaginella moellendorffii HOM05D000079 ORTHO05D000211 2.9e-06 57.0 49 46.9
HPP92_017175 Vanilla planifolia HOM05D000079 ORTHO05D000211 2.9e-06 57.0 55 45.5
AUR62024422 Chenopodium quinoa HOM05D000079 ORTHO05D000211 3.7e-06 56.6 157 28.7
Eucgr.G00684 Eucalyptus grandis HOM05D000079 ORTHO05D000211 3.7e-06 56.6 69 40.6
FvH4_2g37730 Fragaria vesca HOM05D000079 ORTHO05D000211 3.7e-06 56.6 68 44.1
FvH4_3g06650 Fragaria vesca HOM05D000079 ORTHO05D000211 3.7e-06 56.6 62 46.8
FvH4_3g37080 Fragaria vesca HOM05D000079 ORTHO05D000211 3.7e-06 56.6 91 37.4
FAN11G2735 Fragaria x ananassa HOM05D000079 ORTHO05D000211 3.7e-06 56.6 62 46.8
FAN27G1862 Fragaria x ananassa HOM05D000079 ORTHO05D000211 3.7e-06 56.6 68 44.1
HanXRQChr10g0313671 Helianthus annuus HOM05D000079 ORTHO05D000211 3.7e-06 56.6 76 38.2
Oeu022382.1 Olea europaea HOM05D000079 ORTHO05D000508 3.7e-06 56.6 66 39.4
Potri.018G104700 Populus trichocarpa HOM05D000079 ORTHO05D000211 3.7e-06 56.6 57 42.1
SEGI_02232 Sequoiadendron giganteum HOM05D000079 ORTHO05D000211 3.7e-06 56.6 81 37.0
SEGI_12650 Sequoiadendron giganteum HOM05D000079 ORTHO05D009750 3.7e-06 56.6 52 44.2
TPR.G35261 Trifolium pratense HOM05D000079 ORTHO05D000211 3.7e-06 56.6 57 40.4
TWI60G1344 Tripterygium wilfordii HOM05D000148 ORTHO05D000081 3.7e-06 56.6 90 36.7
TAR636G0927 Trochodendron aralioides HOM05D000079 ORTHO05D000211 3.7e-06 56.6 55 45.5
Actinidia07871 Actinidia chinensis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 63 39.7
Actinidia25064 Actinidia chinensis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 63 39.7
Aqoxy4G00310 Aquilegia oxysepala HOM05D000079 ORTHO05D000211 4.9e-06 56.2 51 43.1
Aqoxy4G00453 Aquilegia oxysepala HOM05D000079 ORTHO05D000211 4.9e-06 56.2 51 43.1
CSS0047091 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 102 35.3
CANSAT11G1402 Cannabis sativa HOM05D000079 ORTHO05D000211 4.9e-06 56.2 66 42.4
CANSAT21G0950 Cannabis sativa HOM05D000079 ORTHO05D000211 4.9e-06 56.2 48 43.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.9e-06 56.2 76 36.8
ECA236G3522 Erigeron canadensis HOM05D000148 ORTHO05D000081 4.9e-06 56.2 60 45.0
Eucgr.C02269 Eucalyptus grandis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 74 36.5
Eucgr.G00822 Eucalyptus grandis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 69 37.7
Eucgr.G00843 Eucalyptus grandis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 75 37.3
Sc09g0009890 Simmondsia chinensis HOM05D000079 ORTHO05D000211 4.9e-06 56.2 60 40.0
CSS0036011 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D000211 6.4e-06 55.8 66 40.9
CSS0045486 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D000211 6.4e-06 55.8 66 40.9
CANSAT56G2325 Cannabis sativa HOM05D000079 ORTHO05D000211 6.4e-06 55.8 84 34.5
CANSAT56G4211 Cannabis sativa HOM05D000079 ORTHO05D000211 6.4e-06 55.8 68 41.2
Ciclev10010833m.g Citrus clementina HOM05D000079 ORTHO05D000211 6.4e-06 55.8 122 33.6
Dinv41352 Davidia involucrata HOM05D000079 ORTHO05D000211 6.4e-06 55.8 77 35.1
Nitab4.5_0000413g0070 Nicotiana tabacum HOM05D000079 ORTHO05D000211 6.4e-06 55.8 48 43.8
Nitab4.5_0009729g0020 Nicotiana tabacum HOM05D000079 ORTHO05D000508 6.4e-06 55.8 71 42.3
Oeu047799.1 Olea europaea HOM05D000079 ORTHO05D000508 6.4e-06 55.8 73 38.4
Os11g0507200 Oryza sativa ssp. japonica HOM05D000079 ORTHO05D000211 6.4e-06 55.8 84 32.1
Peaxi162Scf00305g00081 Petunia axillaris HOM05D000148 ORTHO05D000081 6.4e-06 55.8 62 38.7
Potri.005G028100 Populus trichocarpa HOM05D000079 ORTHO05D000211 6.4e-06 55.8 97 30.9
Sopen07g001860 Solanum pennellii HOM05D000079 ORTHO05D000211 6.4e-06 55.8 55 45.5
HPP92_009820 Vanilla planifolia HOM05D000079 ORTHO05D000211 6.4e-06 55.8 59 40.7
Aa31LG10G16150 Aethionema arabicum HOM05D000079 ORTHO05D006963 8.3e-06 55.5 64 45.3
Aqoxy2G03818 Aquilegia oxysepala HOM05D000079 ORTHO05D000211 8.3e-06 55.5 84 29.8
A01p22260 Brassica napus HOM05D000148 ORTHO05D000081 8.3e-06 55.5 174 28.7
CiPaw.08G034300 Carya illinoinensis HOM05D000079 ORTHO05D000211 8.3e-06 55.5 52 38.5
CDE02G2099 Ceratophyllum demersum HOM05D000079 ORTHO05D000211 8.3e-06 55.5 55 43.6
AUR62026556 Chenopodium quinoa HOM05D000079 ORTHO05D000211 8.3e-06 55.5 80 37.5
Haze_12320 Corylus avellana HOM05D000148 ORTHO05D000081 8.3e-06 55.5 68 38.2
Duzib132G0871 Durio zibethinus HOM05D000079 ORTHO05D000211 8.3e-06 55.5 131 29.8
ECA236G1146 Erigeron canadensis HOM05D000079 ORTHO05D000211 8.3e-06 55.5 51 43.1
Eucgr.G00829 Eucalyptus grandis HOM05D000079 ORTHO05D000211 8.3e-06 55.5 69 39.1
FAN16G3193 Fragaria x ananassa HOM05D000079 ORTHO05D000211 8.3e-06 55.5 138 31.2
Lsat_1_v5_gn_7_50101 Lactuca sativa HOM05D000079 ORTHO05D000211 8.3e-06 55.5 70 38.6
Lj2P581T7 Lonicera japonica HOM05D000079 ORTHO05D000211 8.3e-06 55.5 56 44.6
Lj2P585T30 Lonicera japonica HOM05D000079 ORTHO05D000211 8.3e-06 55.5 56 44.6
MBI14_g43556_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D000211 8.3e-06 55.5 49 49.0
Oeu025376.1 Olea europaea HOM05D000079 ORTHO05D000211 8.3e-06 55.5 99 32.3
Os09g0543900 Oryza sativa ssp. japonica HOM05D000079 ORTHO05D003772 8.3e-06 55.5 174 30.5
Peaxi162Scf00045g01112 Petunia axillaris HOM05D000079 ORTHO05D000508 8.3e-06 55.5 66 40.9
Peaxi162Scf00320g00051 Petunia axillaris HOM05D000079 ORTHO05D000211 8.3e-06 55.5 48 43.8
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 8.3e-06 55.5 80 36.2
Solyc07g005760.3 Solanum lycopersicum HOM05D000079 ORTHO05D000211 8.3e-06 55.5 55 43.6
Solyc07g026890.1 Solanum lycopersicum HOM05D000148 ORTHO05D000081 8.3e-06 55.5 75 38.7


User provided reference genes

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