Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 2.9e-207 724.9 355 100.0
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 3.3e-41 173.3 130 61.5
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 4.3e-41 172.9 112 68.8
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 3.6e-40 169.9 146 56.8
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.4e-39 167.9 119 63.0
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 2.3e-39 167.2 138 56.5
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 4.0e-39 166.4 131 59.5
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 6.8e-39 165.6 137 55.5
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 8.9e-39 165.2 118 61.9
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.0e-38 164.1 118 61.0
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 2.6e-38 163.7 119 63.0
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 2.6e-38 163.7 112 65.2
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 3.4e-38 163.3 126 57.9
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 5.8e-38 162.5 130 58.5
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 5.8e-38 162.5 112 64.3
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 7.6e-38 162.2 115 60.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 9.9e-38 161.8 112 63.4
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 9.9e-38 161.8 134 57.5
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 9.9e-38 161.8 118 61.0
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.7e-37 161.0 134 56.7
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.7e-37 161.0 134 56.7
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.7e-37 161.0 134 56.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 2.2e-37 160.6 126 57.9
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.9e-37 160.2 112 62.5
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 3.7e-37 159.8 120 60.8
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 6.4e-37 159.1 126 57.9
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 8.3e-37 158.7 124 58.9
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 8.3e-37 158.7 144 53.5
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 1.1e-36 158.3 145 51.7
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 2.4e-36 157.1 111 60.4
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 4.1e-36 156.4 142 52.8
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 5.4e-36 156.0 139 49.6
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 7.1e-36 155.6 123 61.0
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 9.2e-36 155.2 176 45.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 1.2e-35 154.8 178 44.4
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.2e-35 154.8 132 54.5
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.6e-35 154.5 173 45.1
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.6e-35 154.5 129 58.1
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.5e-35 153.3 133 52.6
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 6.0e-35 152.5 129 55.8
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 7.8e-35 152.1 138 54.3
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 7.8e-35 152.1 127 54.3
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 7.8e-35 152.1 152 48.7
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.3e-34 151.4 115 60.0
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.7e-34 151.0 201 45.3
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 2.3e-34 150.6 122 57.4
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 3.0e-34 150.2 152 48.0
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 5.1e-34 149.4 115 58.3
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 6.6e-34 149.1 118 57.6
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 8.6e-34 148.7 181 41.4
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 1.1e-33 148.3 142 50.0
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.1e-33 148.3 119 55.5
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.1e-33 148.3 119 55.5
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.9e-33 147.5 136 51.5
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.9e-33 147.5 114 59.6
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 2.5e-33 147.1 125 56.8
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 3.3e-33 146.7 143 52.4
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.3e-33 146.4 136 50.7
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 4.3e-33 146.4 117 58.1
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 4.3e-33 146.4 118 56.8
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 4.3e-33 146.4 118 56.8
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 4.3e-33 146.4 122 55.7
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 7.3e-33 145.6 149 47.7
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.2e-32 144.8 146 45.2
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 2.1e-32 144.1 119 52.9
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.1e-32 144.1 112 58.0
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.8e-32 143.7 120 54.2
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 2.8e-32 143.7 146 45.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 2.8e-32 143.7 137 48.2
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.6e-32 143.3 112 58.0
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 4.7e-32 142.9 116 55.2
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 4.7e-32 142.9 128 51.6
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 6.2e-32 142.5 151 45.0
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.1e-31 141.7 125 55.2
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 1.4e-31 141.4 119 51.3
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.8e-31 141.0 141 48.2
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 2.4e-31 140.6 118 50.8
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 3.1e-31 140.2 119 51.3
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 4.0e-31 139.8 108 59.3
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 5.2e-31 139.4 146 43.8
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 5.2e-31 139.4 112 55.4
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 6.8e-31 139.0 102 60.8
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 8.9e-31 138.7 112 56.2
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 2.0e-30 137.5 123 48.8
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 2.0e-30 137.5 123 48.8
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 2.0e-30 137.5 99 63.6
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 2.6e-30 137.1 120 54.2
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 9.9e-30 135.2 120 53.3
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 3.8e-29 133.3 111 55.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 3.8e-29 133.3 114 56.1
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.9e-29 132.9 107 54.2
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.1e-28 131.7 133 48.1
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 2.3e-26 124.0 93 60.2
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.7e-21 107.8 116 48.3
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.7e-21 107.8 101 54.5
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 2.2e-21 107.5 183 36.6
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 8.4e-21 105.5 112 48.2
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.4e-20 104.8 100 53.0
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 3.5e-19 100.1 182 33.0
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 4.6e-19 99.8 73 61.6
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 7.9e-19 99.0 132 41.7
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.3e-18 98.2 101 50.5
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.1e-17 95.1 119 43.7
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.1e-17 95.1 81 53.1
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 9.6e-17 92.0 124 38.7
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 2.1e-16 90.9 122 42.6
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 4.0e-15 86.7 116 41.4
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 9.0e-15 85.5 108 43.5
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 3.4e-14 83.6 114 40.4
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 1.3e-10 71.6 189 31.7
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 6.7e-10 69.3 56 57.1
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 5.3e-07 59.7 133 30.8
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 3.4e-06 57.0 128 32.0
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 4.5e-06 56.6 128 31.2
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 5.8e-06 56.2 125 34.4
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.0e-05 55.5 138 31.2


User provided reference genes

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